Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002479A_C01 KMC002479A_c01
(397 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_225086.1| similar to Zinc finger protein 208 [Rattus norv... 32 1.9
dbj|BAB89243.1| OSJNBa0026J14.30 [Oryza sativa (japonica cultiva... 32 1.9
ref|XP_286143.1| similar to olfactory receptor MOR171-18 [Mus mu... 31 4.3
ref|XP_138535.1| similar to 60S RIBOSOMAL PROTEIN L17 (L23) (AMI... 30 7.3
dbj|BAB07953.1| P0406H10.25 [Oryza sativa (japonica cultivar-gro... 30 7.3
>ref|XP_225086.1| similar to Zinc finger protein 208 [Rattus norvegicus]
Length = 1001
Score = 32.0 bits (71), Expect = 1.9
Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Frame = +2
Query: 14 CKLMGQGNKTPRMLDSTTFSKTSTHGYKCHIYYKAF-TSLILSQGELTH 157
C++ GQG P L T YKC + KAF L+LS+ +++H
Sbjct: 556 CEVCGQGFHVPSKLSHHKIIHTGESPYKCEVCGKAFCIPLLLSKHKISH 604
>dbj|BAB89243.1| OSJNBa0026J14.30 [Oryza sativa (japonica cultivar-group)]
gi|20161885|dbj|BAB90797.1| OSJNBa0042P21.5 [Oryza
sativa (japonica cultivar-group)]
Length = 626
Score = 32.0 bits (71), Expect = 1.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 212 HSYWHRRSSPRQPGMLRHLTTLPKILWMQMSCHNRRTNHRFLYHYYTTNN 361
HSYWH ++PR G ++ ++ NR H LY Y +NN
Sbjct: 231 HSYWHSVNAPRHGG---------SVMGHEVIDRNREARHLRLYQDYFSNN 271
>ref|XP_286143.1| similar to olfactory receptor MOR171-18 [Mus musculus]
Length = 137
Score = 30.8 bits (68), Expect = 4.3
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -3
Query: 380 PKSIDICCLLC--NSGIRIDGWCAYCDNSFASKVFLAVWL 267
P + +I C+LC ++ R++ + +Y + FA VFL +WL
Sbjct: 67 PYTFNITCILCIKSTNGRVNAFSSYNSHFFAVVVFLVLWL 106
>ref|XP_138535.1| similar to 60S RIBOSOMAL PROTEIN L17 (L23) (AMINO ACID
STARVATION-INDUCED PROTEIN) (ASI) [Mus musculus]
gi|25059153|ref|XP_111387.2| similar to 60S RIBOSOMAL
PROTEIN L17 (L23) (AMINO ACID STARVATION-INDUCED
PROTEIN) (ASI) [Mus musculus]
Length = 331
Score = 30.0 bits (66), Expect = 7.3
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 146 ELTHI*ILNILPLVLLLHYHAPHSYWHRRSSPRQPGMLRHLTTLPKILWMQMSCHN 313
E H I P LL HY H R+ P +P + R ++ + ++CH+
Sbjct: 7 ECLHTACQTITPFFLLSHYSKLQDVKHERNKPVEPFLTRKKQDCMRLPFQLINCHH 62
>dbj|BAB07953.1| P0406H10.25 [Oryza sativa (japonica cultivar-group)]
gi|13161446|dbj|BAB33016.1| OJ1174_D05.8 [Oryza sativa
(japonica cultivar-group)]
Length = 488
Score = 30.0 bits (66), Expect = 7.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 212 HSYWHRRSSPRQPGMLRHLTTLPKILWMQMSCHNRRTNHRFLYHYYTTNN 361
HSYWH ++PR G ++ ++ NR H LY Y ++N
Sbjct: 93 HSYWHSVNAPRHGG---------SVMGHEVIDRNREARHLRLYQDYFSDN 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 348,065,818
Number of Sequences: 1393205
Number of extensions: 6967030
Number of successful extensions: 17165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17150
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
