Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002472A_C01 KMC002472A_c01
(855 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97056.1| uroporphyrinogen decarboxylase [Arabidopsis thal... 158 1e-37
gb|AAL15294.1| AT3g14930/K15M2_7 [Arabidopsis thaliana] 158 1e-37
ref|NP_566495.1| uroporphyrinogen decarboxylase, putative; prote... 158 1e-37
dbj|BAB21078.1| putative uroporphyrinogen decarboxylase [Oryza s... 145 6e-34
sp|Q42855|DCUP_HORVU Uroporphyrinogen decarboxylase (UPD) gi|136... 110 3e-23
>dbj|BAA97056.1| uroporphyrinogen decarboxylase [Arabidopsis thaliana]
gi|22531275|gb|AAM97141.1| putative uroporphyrinogen
decarboxylase [Arabidopsis thaliana]
Length = 341
Score = 158 bits (399), Expect = 1e-37
Identities = 78/102 (76%), Positives = 86/102 (83%), Gaps = 3/102 (2%)
Frame = -3
Query: 853 IGLDWTVDMPDGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGH 674
IGLDWTVDM DGRRRLGS + VQGNVDPA LFSPL +LTEEI+RVVKCAGP+GHILNLGH
Sbjct: 240 IGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVKCAGPKGHILNLGH 299
Query: 673 GVLVGTPEEAVAHFFEVARSLKFDTHFQN---TTANDPELVI 557
GVLVGTPEEAVAHFFE AR+L + T FQN +PELV+
Sbjct: 300 GVLVGTPEEAVAHFFETARNLDYQTLFQNHVPAEKAEPELVV 341
>gb|AAL15294.1| AT3g14930/K15M2_7 [Arabidopsis thaliana]
Length = 418
Score = 158 bits (399), Expect = 1e-37
Identities = 78/102 (76%), Positives = 86/102 (83%), Gaps = 3/102 (2%)
Frame = -3
Query: 853 IGLDWTVDMPDGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGH 674
IGLDWTVDM DGRRRLGS + VQGNVDPA LFSPL +LTEEI+RVVKCAGP+GHILNLGH
Sbjct: 317 IGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVKCAGPKGHILNLGH 376
Query: 673 GVLVGTPEEAVAHFFEVARSLKFDTHFQN---TTANDPELVI 557
GVLVGTPEEAVAHFFE AR+L + T FQN +PELV+
Sbjct: 377 GVLVGTPEEAVAHFFETARNLDYQTLFQNHVPAEKAEPELVV 418
>ref|NP_566495.1| uroporphyrinogen decarboxylase, putative; protein id: At3g14930.1,
supported by cDNA: gi_16323118 [Arabidopsis thaliana]
Length = 418
Score = 158 bits (399), Expect = 1e-37
Identities = 78/102 (76%), Positives = 86/102 (83%), Gaps = 3/102 (2%)
Frame = -3
Query: 853 IGLDWTVDMPDGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGH 674
IGLDWTVDM DGRRRLGS + VQGNVDPA LFSPL +LTEEI+RVVKCAGP+GHILNLGH
Sbjct: 317 IGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVKCAGPKGHILNLGH 376
Query: 673 GVLVGTPEEAVAHFFEVARSLKFDTHFQN---TTANDPELVI 557
GVLVGTPEEAVAHFFE AR+L + T FQN +PELV+
Sbjct: 377 GVLVGTPEEAVAHFFETARNLDYQTLFQNHVPAEKAEPELVV 418
>dbj|BAB21078.1| putative uroporphyrinogen decarboxylase [Oryza sativa (japonica
cultivar-group)]
Length = 402
Score = 145 bits (367), Expect = 6e-34
Identities = 71/88 (80%), Positives = 77/88 (86%)
Frame = -3
Query: 853 IGLDWTVDMPDGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGH 674
IGLDWTVDM DGRRRLG+ I VQGNVDPA LFSPL LT+EI RVVK AGP+GHILNLGH
Sbjct: 304 IGLDWTVDMADGRRRLGNKISVQGNVDPAFLFSPLPVLTDEIHRVVKSAGPKGHILNLGH 363
Query: 673 GVLVGTPEEAVAHFFEVARSLKFDTHFQ 590
GVLV TPEEAVAHFF+V RSL++DT FQ
Sbjct: 364 GVLVKTPEEAVAHFFDVTRSLRYDTLFQ 391
>sp|Q42855|DCUP_HORVU Uroporphyrinogen decarboxylase (UPD) gi|1362169|pir||S55733
uroporphyrinogen decarboxylase - barley
gi|1016347|emb|CAA58039.1| uroporphyrinogen
decarboxylase [Hordeum vulgare subsp. vulgare]
Length = 330
Score = 110 bits (275), Expect = 3e-23
Identities = 50/83 (60%), Positives = 63/83 (75%)
Frame = -3
Query: 853 IGLDWTVDMPDGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGH 674
+ LDWTVDM +GR+RLGS I VQGNVDP LF +T+ I V+ AG +GH+LNLGH
Sbjct: 248 VSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFITKRIYDTVQKAGSQGHVLNLGH 307
Query: 673 GVLVGTPEEAVAHFFEVARSLKF 605
G+ VGTPEE VAHFFEVA+ +++
Sbjct: 308 GIKVGTPEENVAHFFEVAKGIRY 330
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 740,319,006
Number of Sequences: 1393205
Number of extensions: 16167915
Number of successful extensions: 39183
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 37127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39097
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45152354394
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
