Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002471A_C03 KMC002471A_c03
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89911.1| putative Vacuolar ATP synthase subunit d [Oryza ... 172 6e-53
ref|NP_189512.1| adenosine triphosphatase, putative; protein id:... 172 2e-52
gb|AAG40030.1|AF324679_1 AT3g28710 [Arabidopsis thaliana] gi|119... 172 2e-52
ref|NP_189513.1| hypothetical protein; protein id: At3g28715.1, ... 172 2e-52
emb|CAD27914.1| putative vacuolar ATPase subunit d [Mesembryanth... 87 4e-25
>dbj|BAB89911.1| putative Vacuolar ATP synthase subunit d [Oryza sativa (japonica
cultivar-group)]
Length = 351
Score = 172 bits (436), Expect(2) = 6e-53
Identities = 80/86 (93%), Positives = 85/86 (98%)
Frame = -3
Query: 636 RRKLYSNFGLLYPYGHEELAVCEDVDQVRAVMEKYPPYQSIFAKLSYGESQMLDKAFYEE 457
RRKLYSNFGLLYPYGHEELAVCEDVDQVR VMEKYPPYQ+IFAK+SYGESQMLDKAFYEE
Sbjct: 237 RRKLYSNFGLLYPYGHEELAVCEDVDQVRGVMEKYPPYQAIFAKISYGESQMLDKAFYEE 296
Query: 456 EVKRLCLAFEQQFHYAVFFAYMRLRE 379
EV+RLCL+FEQQFHYAVFFAY+RLRE
Sbjct: 297 EVRRLCLSFEQQFHYAVFFAYIRLRE 322
Score = 57.4 bits (137), Expect(2) = 6e-53
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = -2
Query: 376 RRLRNLMWISECVAQNQKSRVHDSVVFIF 290
+ +RNLMWISECVAQNQK+RVHDSVVFIF
Sbjct: 323 QEIRNLMWISECVAQNQKNRVHDSVVFIF 351
>ref|NP_189512.1| adenosine triphosphatase, putative; protein id: At3g28710.1,
supported by cDNA: 29760., supported by cDNA:
gi_11993862, supported by cDNA: gi_13265459, supported
by cDNA: gi_14532479, supported by cDNA: gi_18655356
[Arabidopsis thaliana] gi|12230764|sp|Q9LJI5|V0D1_ARATH
Probable vacuolar ATP synthase subunit d 1 (V-ATPase d
subunit 1) (Vacuolar proton pump d subunit 1)
gi|9294284|dbj|BAB02186.1| vacuolar ATP synthase subunit
AC39 [Arabidopsis thaliana] gi|14532480|gb|AAK63968.1|
AT3g28710/MZN14_20 [Arabidopsis thaliana]
gi|18655357|gb|AAL76134.1| AT3g28710/MZN14_20
[Arabidopsis thaliana] gi|23297057|gb|AAN13080.1|
putative adenosine triphosphatase [Arabidopsis thaliana]
Length = 351
Score = 172 bits (435), Expect(2) = 2e-52
Identities = 78/86 (90%), Positives = 85/86 (98%)
Frame = -3
Query: 636 RRKLYSNFGLLYPYGHEELAVCEDVDQVRAVMEKYPPYQSIFAKLSYGESQMLDKAFYEE 457
R+KLYSNFGLLYPYGHEELA+CED+DQVR VMEKYPPYQ+IF+K+SYGESQMLDKAFYEE
Sbjct: 237 RKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEE 296
Query: 456 EVKRLCLAFEQQFHYAVFFAYMRLRE 379
EV+RLCLAFEQQFHYAVFFAYMRLRE
Sbjct: 297 EVRRLCLAFEQQFHYAVFFAYMRLRE 322
Score = 55.8 bits (133), Expect(2) = 2e-52
Identities = 23/29 (79%), Positives = 28/29 (96%)
Frame = -2
Query: 376 RRLRNLMWISECVAQNQKSRVHDSVVFIF 290
+ +RNLMWISECVAQNQKSR+HDSVV++F
Sbjct: 323 QEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>gb|AAG40030.1|AF324679_1 AT3g28710 [Arabidopsis thaliana]
gi|11993863|gb|AAG42915.1|AF327534_1 putative adenosine
triphosphatase [Arabidopsis thaliana]
Length = 351
Score = 172 bits (435), Expect(2) = 2e-52
Identities = 78/86 (90%), Positives = 85/86 (98%)
Frame = -3
Query: 636 RRKLYSNFGLLYPYGHEELAVCEDVDQVRAVMEKYPPYQSIFAKLSYGESQMLDKAFYEE 457
R+KLYSNFGLLYPYGHEELA+CED+DQVR VMEKYPPYQ+IF+K+SYGESQMLDKAFYEE
Sbjct: 237 RKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEE 296
Query: 456 EVKRLCLAFEQQFHYAVFFAYMRLRE 379
EV+RLCLAFEQQFHYAVFFAYMRLRE
Sbjct: 297 EVRRLCLAFEQQFHYAVFFAYMRLRE 322
Score = 55.8 bits (133), Expect(2) = 2e-52
Identities = 23/29 (79%), Positives = 28/29 (96%)
Frame = -2
Query: 376 RRLRNLMWISECVAQNQKSRVHDSVVFIF 290
+ +RNLMWISECVAQNQKSR+HDSVV++F
Sbjct: 323 QEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>ref|NP_189513.1| hypothetical protein; protein id: At3g28715.1, supported by cDNA:
gi_16226843, supported by cDNA: gi_17065117, supported
by cDNA: gi_16226843, supported by cDNA: gi_17065117
[Arabidopsis thaliana] gi|12585471|sp|Q9LHA4|V0D2_ARATH
Probable vacuolar ATP synthase subunit d 2 (V-ATPase d
subunit 2) (Vacuolar proton pump d subunit 2)
gi|16226844|gb|AAL16278.1|AF428348_1 AT3g28715/MZN14_21
[Arabidopsis thaliana] gi|17065118|gb|AAL32713.1|
Unknown protein [Arabidopsis thaliana]
gi|23197892|gb|AAN15473.1| Unknown protein [Arabidopsis
thaliana]
Length = 351
Score = 172 bits (435), Expect(2) = 2e-52
Identities = 78/86 (90%), Positives = 85/86 (98%)
Frame = -3
Query: 636 RRKLYSNFGLLYPYGHEELAVCEDVDQVRAVMEKYPPYQSIFAKLSYGESQMLDKAFYEE 457
R+KLYSNFGLLYPYGHEELA+CED+DQVR VMEKYPPYQ+IF+K+SYGESQMLDKAFYEE
Sbjct: 237 RKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEE 296
Query: 456 EVKRLCLAFEQQFHYAVFFAYMRLRE 379
EV+RLCLAFEQQFHYAVFFAYMRLRE
Sbjct: 297 EVRRLCLAFEQQFHYAVFFAYMRLRE 322
Score = 55.8 bits (133), Expect(2) = 2e-52
Identities = 23/29 (79%), Positives = 28/29 (96%)
Frame = -2
Query: 376 RRLRNLMWISECVAQNQKSRVHDSVVFIF 290
+ +RNLMWISECVAQNQKSR+HDSVV++F
Sbjct: 323 QEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>emb|CAD27914.1| putative vacuolar ATPase subunit d [Mesembryanthemum crystallinum]
Length = 353
Score = 87.0 bits (214), Expect(2) = 4e-25
Identities = 47/90 (52%), Positives = 55/90 (60%)
Frame = -3
Query: 636 RRKLYSNFGLLYPYGHEELAVCEDVDQVRAVMEKYPPYQSIFAKLSYGESQMLDKAFYEE 457
R KL+S FGLLYPYG E+LA CED+ R EK PPY IF+ +SYGES+MLD AF E
Sbjct: 238 RTKLHSTFGLLYPYGREKLAGCEDIYHARGEPEKDPPYPPIFSAMSYGESEMLDWAFGVE 297
Query: 456 EVKRLCLAFEQQFHYAVFFAYMRLREPGDS 367
V RLCL+ + MRL E S
Sbjct: 298 AVMRLCLSVSESLLPEPSSLDMRLMEQSRS 327
Score = 49.7 bits (117), Expect(2) = 4e-25
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = -2
Query: 373 RLRNLMWISECVAQNQKSRVHDSVVFIF 290
R RNLMWIS+CVA NQK R+HD VVF+F
Sbjct: 326 RSRNLMWISQCVAHNQKHRLHDGVVFMF 353
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,038,300
Number of Sequences: 1393205
Number of extensions: 10967741
Number of successful extensions: 29209
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 28042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29149
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
