Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002469A_C01 KMC002469A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63910.1| remorin [Arabidopsis thaliana] 137 8e-32
ref|NP_197764.1| putative protein; protein id: At5g23750.1, supp... 137 1e-31
ref|NP_191685.1| putative DNA-binding protein; protein id: At3g6... 131 4e-30
pir||T07780 remorin - potato gi|1881585|gb|AAB49425.1| remorin [... 131 5e-30
ref|NP_190463.1| remorin -like protein; protein id: At3g48940.1 ... 129 2e-29
>gb|AAM63910.1| remorin [Arabidopsis thaliana]
Length = 202
Score = 137 bits (345), Expect = 8e-32
Identities = 62/113 (54%), Positives = 90/113 (78%)
Frame = -2
Query: 520 ESQKRLALIKAWEENEKTKVDNKAYKLQCAVDMWEKTKKASTQAKIKKIEENMDRKKADY 341
E++KR++LIKAWEE EK KV+NKA K ++ WE KKA+ +A++KK+EE++++KKA+Y
Sbjct: 89 ETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEHLEKKKAEY 148
Query: 340 VEIMQNQIAETHRLADEKKALIEAQKGEEVLKVEETAAKFRTRGYVPKKFLSC 182
VE M+N+IA+ H+ A+EK+A+IEA++GEE+LK EE AAK+R G PKK C
Sbjct: 149 VEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201
>ref|NP_197764.1| putative protein; protein id: At5g23750.1, supported by cDNA:
28686., supported by cDNA: gi_14423537 [Arabidopsis
thaliana] gi|10176842|dbj|BAB10048.1| contains
similarity to remorin~gene_id:MRO11.21 [Arabidopsis
thaliana] gi|14423538|gb|AAK62451.1|AF387006_1 Unknown
protein [Arabidopsis thaliana]
gi|23197616|gb|AAN15335.1| Unknown protein [Arabidopsis
thaliana]
Length = 202
Score = 137 bits (344), Expect = 1e-31
Identities = 62/113 (54%), Positives = 89/113 (77%)
Frame = -2
Query: 520 ESQKRLALIKAWEENEKTKVDNKAYKLQCAVDMWEKTKKASTQAKIKKIEENMDRKKADY 341
E++KR++LIKAWEE EK KV+NKA K ++ WE KKA+ +A++KK+EE +++KKA+Y
Sbjct: 89 ETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEY 148
Query: 340 VEIMQNQIAETHRLADEKKALIEAQKGEEVLKVEETAAKFRTRGYVPKKFLSC 182
VE M+N+IA+ H+ A+EK+A+IEA++GEE+LK EE AAK+R G PKK C
Sbjct: 149 VEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201
>ref|NP_191685.1| putative DNA-binding protein; protein id: At3g61260.1, supported by
cDNA: 40796., supported by cDNA: gi_17104524
[Arabidopsis thaliana] gi|11281997|pir||T47918 probable
DNA-binding protein - Arabidopsis thaliana
gi|6850893|emb|CAB71056.1| putative DNA-binding protein
[Arabidopsis thaliana]
gi|13878167|gb|AAK44161.1|AF370346_1 putative
DNA-binding protein [Arabidopsis thaliana]
gi|17104525|gb|AAL34151.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|21593640|gb|AAM65607.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 212
Score = 131 bits (330), Expect = 4e-30
Identities = 59/112 (52%), Positives = 87/112 (77%)
Frame = -2
Query: 514 QKRLALIKAWEENEKTKVDNKAYKLQCAVDMWEKTKKASTQAKIKKIEENMDRKKADYVE 335
+KRL+ ++AWEE+EK+K +NKA K V WE +KKA+ +A++KKIEE +++KKA+Y E
Sbjct: 101 EKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAE 160
Query: 334 IMQNQIAETHRLADEKKALIEAQKGEEVLKVEETAAKFRTRGYVPKKFLSCF 179
M+N++A H+ A+E++A+IEA++GE+VLK EETAAK+R G VPK CF
Sbjct: 161 RMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212
>pir||T07780 remorin - potato gi|1881585|gb|AAB49425.1| remorin [Solanum
tuberosum]
Length = 198
Score = 131 bits (329), Expect = 5e-30
Identities = 60/113 (53%), Positives = 89/113 (78%)
Frame = -2
Query: 517 SQKRLALIKAWEENEKTKVDNKAYKLQCAVDMWEKTKKASTQAKIKKIEENMDRKKADYV 338
++KR++LIKAWEE+EK+K +NKA K A+ WE +KKA+ +A++KK+EE +++KKA+Y
Sbjct: 86 TEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYT 145
Query: 337 EIMQNQIAETHRLADEKKALIEAQKGEEVLKVEETAAKFRTRGYVPKKFLSCF 179
E M+N+IA H+ A+EK+A+IEA++GE++LK EE AAK+R G PKK L F
Sbjct: 146 EKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198
>ref|NP_190463.1| remorin -like protein; protein id: At3g48940.1 [Arabidopsis
thaliana] gi|11281998|pir||T46136 remorin-like protein -
Arabidopsis thaliana gi|6522572|emb|CAB62016.1|
remorin-like protein [Arabidopsis thaliana]
Length = 175
Score = 129 bits (325), Expect = 2e-29
Identities = 62/114 (54%), Positives = 85/114 (74%)
Frame = -2
Query: 520 ESQKRLALIKAWEENEKTKVDNKAYKLQCAVDMWEKTKKASTQAKIKKIEENMDRKKADY 341
E KR++LIKAWEE EK+KV+NKA K +V WE +KKAS +A++KKIEE +++KKA Y
Sbjct: 62 EQDKRISLIKAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHY 121
Query: 340 VEIMQNQIAETHRLADEKKALIEAQKGEEVLKVEETAAKFRTRGYVPKKFLSCF 179
E M+N+IA+ H+ A+EK+A+ EA++GE+VLK EE AAK+R G P K F
Sbjct: 122 TEQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,169,246
Number of Sequences: 1393205
Number of extensions: 7855514
Number of successful extensions: 26838
Number of sequences better than 10.0: 262
Number of HSP's better than 10.0 without gapping: 25381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26739
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
