Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002468A_C01 KMC002468A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199565.1| putative protein; protein id: At5g47540.1 [Arab... 117 1e-32
sp|Q9FGK3|MO2N_ARATH Hypothetical MO25-like protein At5g47540 gi... 117 1e-32
ref|NP_193460.1| putative protein; protein id: At4g17270.1, supp... 108 7e-30
pir||G71441 hypothetical protein - Arabidopsis thaliana gi|22450... 108 7e-30
dbj|BAC22269.1| putative MO25 protein (CGI-66) [Oryza sativa (ja... 108 4e-27
>ref|NP_199565.1| putative protein; protein id: At5g47540.1 [Arabidopsis thaliana]
Length = 344
Score = 117 bits (294), Expect(2) = 1e-32
Identities = 59/70 (84%), Positives = 67/70 (95%)
Frame = -3
Query: 545 LGDMLLDRSNSAVMTRYVSSRDNMRILMNLLRESSQSIQLEAFHVFKLFAANPNQPADIV 366
LGD+LLDRSNSAVMT+YVSSRDN+RILMNLLRESS+SIQ+EAFHVFKLFAAN N+PADIV
Sbjct: 239 LGDILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIV 298
Query: 365 GILVANPSQI 336
ILVAN S++
Sbjct: 299 NILVANRSKL 308
Score = 43.9 bits (102), Expect(2) = 1e-32
Identities = 20/38 (52%), Positives = 31/38 (80%)
Frame = -1
Query: 346 QARFLRLMDEFQIDKEDEQSQADKAQVMEEIAALELRE 233
+++ LRL+ + + DKEDE+ +ADK+QV+ EIAALE R+
Sbjct: 305 RSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRD 342
>sp|Q9FGK3|MO2N_ARATH Hypothetical MO25-like protein At5g47540 gi|9758782|dbj|BAB09080.1|
emb|CAB78730.1~gene_id:MNJ7.13~similar to unknown
protein [Arabidopsis thaliana]
gi|16226301|gb|AAL16128.1|AF428296_1 AT5g47540/MNJ7_13
[Arabidopsis thaliana]
Length = 343
Score = 117 bits (294), Expect(2) = 1e-32
Identities = 59/70 (84%), Positives = 67/70 (95%)
Frame = -3
Query: 545 LGDMLLDRSNSAVMTRYVSSRDNMRILMNLLRESSQSIQLEAFHVFKLFAANPNQPADIV 366
LGD+LLDRSNSAVMT+YVSSRDN+RILMNLLRESS+SIQ+EAFHVFKLFAAN N+PADIV
Sbjct: 238 LGDILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIV 297
Query: 365 GILVANPSQI 336
ILVAN S++
Sbjct: 298 NILVANRSKL 307
Score = 43.9 bits (102), Expect(2) = 1e-32
Identities = 20/38 (52%), Positives = 31/38 (80%)
Frame = -1
Query: 346 QARFLRLMDEFQIDKEDEQSQADKAQVMEEIAALELRE 233
+++ LRL+ + + DKEDE+ +ADK+QV+ EIAALE R+
Sbjct: 304 RSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRD 341
>ref|NP_193460.1| putative protein; protein id: At4g17270.1, supported by cDNA:
gi_14190518, supported by cDNA: gi_15810066 [Arabidopsis
thaliana] gi|15214078|sp|Q9M0M4|MO2M_ARATH Hypothetical
MO25-like protein At4g17270 gi|7268479|emb|CAB78730.1|
putative protein [Arabidopsis thaliana]
gi|14190519|gb|AAK55740.1|AF380659_1 AT4g17270/dl4670w
[Arabidopsis thaliana] gi|15810067|gb|AAL06959.1|
AT4g17270/dl4670w [Arabidopsis thaliana]
Length = 343
Score = 108 bits (271), Expect(2) = 7e-30
Identities = 53/70 (75%), Positives = 64/70 (90%)
Frame = -3
Query: 545 LGDMLLDRSNSAVMTRYVSSRDNMRILMNLLRESSQSIQLEAFHVFKLFAANPNQPADIV 366
LGD+LLDRSNSAVMT+YVSS DN+RILMNLLRESS++IQ+EAFHVFKLF AN N+P+DI
Sbjct: 238 LGDILLDRSNSAVMTKYVSSMDNLRILMNLLRESSKTIQIEAFHVFKLFVANQNKPSDIA 297
Query: 365 GILVANPSQI 336
ILVAN +++
Sbjct: 298 NILVANRNKL 307
Score = 43.1 bits (100), Expect(2) = 7e-30
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = -1
Query: 340 RFLRLMDEFQIDKEDEQSQADKAQVMEEIAALELRE 233
+ LRL+ + + DKEDE+ ADKAQV+ EIA L+LRE
Sbjct: 306 KLLRLLADIKPDKEDERFDADKAQVVREIANLKLRE 341
>pir||G71441 hypothetical protein - Arabidopsis thaliana
gi|2245086|emb|CAB10508.1| hypothetical protein
[Arabidopsis thaliana]
Length = 305
Score = 108 bits (271), Expect(2) = 7e-30
Identities = 53/70 (75%), Positives = 64/70 (90%)
Frame = -3
Query: 545 LGDMLLDRSNSAVMTRYVSSRDNMRILMNLLRESSQSIQLEAFHVFKLFAANPNQPADIV 366
LGD+LLDRSNSAVMT+YVSS DN+RILMNLLRESS++IQ+EAFHVFKLF AN N+P+DI
Sbjct: 200 LGDILLDRSNSAVMTKYVSSMDNLRILMNLLRESSKTIQIEAFHVFKLFVANQNKPSDIA 259
Query: 365 GILVANPSQI 336
ILVAN +++
Sbjct: 260 NILVANRNKL 269
Score = 43.1 bits (100), Expect(2) = 7e-30
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = -1
Query: 340 RFLRLMDEFQIDKEDEQSQADKAQVMEEIAALELRE 233
+ LRL+ + + DKEDE+ ADKAQV+ EIA L+LRE
Sbjct: 268 KLLRLLADIKPDKEDERFDADKAQVVREIANLKLRE 303
>dbj|BAC22269.1| putative MO25 protein (CGI-66) [Oryza sativa (japonica
cultivar-group)]
Length = 333
Score = 108 bits (269), Expect(2) = 4e-27
Identities = 52/71 (73%), Positives = 63/71 (88%)
Frame = -3
Query: 548 FLGDMLLDRSNSAVMTRYVSSRDNMRILMNLLRESSQSIQLEAFHVFKLFAANPNQPADI 369
FLGDMLLDRSNS VM RYVSS+DN+ ILMNLLR+SS++IQ+EAFHVFKLFAAN N+P ++
Sbjct: 234 FLGDMLLDRSNSTVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEV 293
Query: 368 VGILVANPSQI 336
V ILV N S++
Sbjct: 294 VNILVTNRSKL 304
Score = 34.7 bits (78), Expect(2) = 4e-27
Identities = 18/34 (52%), Positives = 26/34 (75%)
Frame = -1
Query: 346 QARFLRLMDEFQIDKEDEQSQADKAQVMEEIAAL 245
+++ LR F+IDK DEQ +ADK QV++EI+AL
Sbjct: 301 RSKLLRFFAGFKIDK-DEQFEADKEQVIKEISAL 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,396,123
Number of Sequences: 1393205
Number of extensions: 8796409
Number of successful extensions: 21718
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 21230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21708
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
