Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002466A_C01 KMC002466A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D84421 probable amino acid permease [imported] - Arabidopsi... 232 2e-60
gb|AAL86294.1| putative amino acid or GABA permease [Arabidopsis... 232 2e-60
ref|NP_565254.1| amino acid permease family; protein id: At2g011... 232 2e-60
dbj|BAB63860.1| contains EST AU031682(R0503)~similar to GABA per... 213 9e-55
dbj|BAB63858.1| contains EST D23882(R0503)~similar to GABA perme... 204 6e-52
>pir||D84421 probable amino acid permease [imported] - Arabidopsis thaliana
Length = 517
Score = 232 bits (592), Expect = 2e-60
Identities = 108/141 (76%), Positives = 125/141 (88%)
Frame = -1
Query: 539 LWHKVNKQEVPIYAVWLSVLISFCMALTSLGSMVAFQAMVSIATIGLYIAYALPIFFRVT 360
LWHKVN +EVPI AVWLS LISFCMALTSLGS+VAFQAMVSIATIGLYIAYA+PI RVT
Sbjct: 375 LWHKVNSREVPINAVWLSALISFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVT 434
Query: 359 LAQKRFVPGPFNLGRYGVIVGWIAVLWVVTISILFSLPVSYPITIETLNYTPVAVGCLLI 180
LA+ FVPGPF+LG+YG++VGW+AVLWVVTIS+LFSLPV+YPIT ETLNYTPVAV L+
Sbjct: 435 LARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLVA 494
Query: 179 LVVSYWIISGRRWFKGPVTNI 117
+ +SYW+ S R WF GP++NI
Sbjct: 495 ITLSYWLFSARHWFTGPISNI 515
>gb|AAL86294.1| putative amino acid or GABA permease [Arabidopsis thaliana]
Length = 516
Score = 232 bits (592), Expect = 2e-60
Identities = 108/141 (76%), Positives = 125/141 (88%)
Frame = -1
Query: 539 LWHKVNKQEVPIYAVWLSVLISFCMALTSLGSMVAFQAMVSIATIGLYIAYALPIFFRVT 360
LWHKVN +EVPI AVWLS LISFCMALTSLGS+VAFQAMVSIATIGLYIAYA+PI RVT
Sbjct: 374 LWHKVNSREVPINAVWLSALISFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVT 433
Query: 359 LAQKRFVPGPFNLGRYGVIVGWIAVLWVVTISILFSLPVSYPITIETLNYTPVAVGCLLI 180
LA+ FVPGPF+LG+YG++VGW+AVLWVVTIS+LFSLPV+YPIT ETLNYTPVAV L+
Sbjct: 434 LARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLVA 493
Query: 179 LVVSYWIISGRRWFKGPVTNI 117
+ +SYW+ S R WF GP++NI
Sbjct: 494 ITLSYWLFSARHWFTGPISNI 514
>ref|NP_565254.1| amino acid permease family; protein id: At2g01170.1, supported by
cDNA: gi_19347736, supported by cDNA: gi_2444270
[Arabidopsis thaliana] gi|2444271|gb|AAB71542.1|
putative amino acid or GABA permease [Arabidopsis
thaliana] gi|20197592|gb|AAD14517.2| putative amino acid
or GABA permease [Arabidopsis thaliana]
Length = 516
Score = 232 bits (592), Expect = 2e-60
Identities = 108/141 (76%), Positives = 125/141 (88%)
Frame = -1
Query: 539 LWHKVNKQEVPIYAVWLSVLISFCMALTSLGSMVAFQAMVSIATIGLYIAYALPIFFRVT 360
LWHKVN +EVPI AVWLS LISFCMALTSLGS+VAFQAMVSIATIGLYIAYA+PI RVT
Sbjct: 374 LWHKVNSREVPINAVWLSALISFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVT 433
Query: 359 LAQKRFVPGPFNLGRYGVIVGWIAVLWVVTISILFSLPVSYPITIETLNYTPVAVGCLLI 180
LA+ FVPGPF+LG+YG++VGW+AVLWVVTIS+LFSLPV+YPIT ETLNYTPVAV L+
Sbjct: 434 LARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLVA 493
Query: 179 LVVSYWIISGRRWFKGPVTNI 117
+ +SYW+ S R WF GP++NI
Sbjct: 494 ITLSYWLFSARHWFTGPISNI 514
>dbj|BAB63860.1| contains EST AU031682(R0503)~similar to GABA permease~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|19386878|dbj|BAB86255.1| P0614D08.23 [Oryza sativa
(japonica cultivar-group)]
Length = 637
Score = 213 bits (543), Expect = 9e-55
Identities = 98/140 (70%), Positives = 119/140 (85%)
Frame = -1
Query: 539 LWHKVNKQEVPIYAVWLSVLISFCMALTSLGSMVAFQAMVSIATIGLYIAYALPIFFRVT 360
+WH+VNKQEVPI AVWLSV+++F MALTSLGS VAFQAMVSIATIGL I+YALPIFFRVT
Sbjct: 492 VWHRVNKQEVPINAVWLSVVVAFIMALTSLGSQVAFQAMVSIATIGLCISYALPIFFRVT 551
Query: 359 LAQKRFVPGPFNLGRYGVIVGWIAVLWVVTISILFSLPVSYPITIETLNYTPVAVGCLLI 180
A+ FVPGPF+LG+YG++VGW AVLWV +++LFSLPV+YP+ ET NYTPVAVG +L+
Sbjct: 552 TARGSFVPGPFHLGKYGIVVGWAAVLWVAAVTVLFSLPVAYPVAEETFNYTPVAVGGVLL 611
Query: 179 LVVSYWIISGRRWFKGPVTN 120
L V W + R WF+GP+TN
Sbjct: 612 LTVGAWALRARFWFQGPITN 631
>dbj|BAB63858.1| contains EST D23882(R0503)~similar to GABA permease~unknown protein
[Oryza sativa (japonica cultivar-group)]
gi|19386876|dbj|BAB86253.1| P0614D08.21 [Oryza sativa
(japonica cultivar-group)]
Length = 521
Score = 204 bits (519), Expect = 6e-52
Identities = 92/142 (64%), Positives = 118/142 (82%), Gaps = 1/142 (0%)
Frame = -1
Query: 539 LWHKVNKQEVPIYAVWLSVLISFCMALTSLGSMVAFQAMVSIATIGLYIAYALPIFFRVT 360
+W++VNK EVP+ VWL V ++F MALTSLGS VAFQAM SIAT+G+YIAYALP+FFRVT
Sbjct: 376 VWYRVNKHEVPLNVVWLGVAVAFVMALTSLGSQVAFQAMGSIATLGMYIAYALPVFFRVT 435
Query: 359 LAQKRFVPGPFNLGRYGVIVGWIAVLWVVTISILFSLPVSYPI-TIETLNYTPVAVGCLL 183
A++ FVPGPF+LGRYGV+VGW V+WV T+++LFSLPV+YP+ ET NYTPVAVG +L
Sbjct: 436 TARRSFVPGPFHLGRYGVVVGWAGVVWVATVTVLFSLPVAYPVANKETFNYTPVAVGGVL 495
Query: 182 ILVVSYWIISGRRWFKGPVTNI 117
+L V W++ R WF+GP+TN+
Sbjct: 496 LLSVGAWVLRARFWFQGPITNV 517
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,808,596
Number of Sequences: 1393205
Number of extensions: 11153350
Number of successful extensions: 29689
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 28814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29660
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
