KMC002464A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002464A_C01 KMC002464A_c01
aagcgacaaaaaaaaaactatgccagtaagtctgGACAAGAAAATACTAAATAAAATGTT
TGGCCAACAAGTCAAAGTCAGCCCTGTCCATTATAGGCATACATCAAATTAATGAATTTT
CAAGGCAAGATGAACTAGGCAGAAAATGAAATCAAGCTTATACGCATTCTAGAATATATC
ATTCTGGATTAACTTCCACTAGCTTGGCATTGATGAAATAAGATGCAGCAATGGATTTTT
TTTTTCTTTCCCTTCAAGTGAAATAAGTTATGAAAACAACCTGGTAGCAGATAGTTCCAA
TTGCATACATTTTCTACTTGAAGAATTCCATAACCCAGAAGGAACGAACATAGCATTCAT
ATCTAATGCCACTAAATCCAGCCGCAGTTGCTAGCTCCATGAATTCTTGCTCAGTTCGCT
CTTTCCCTCCTGGGTTTTGAGTCATCATCATTACATCGATTTGGGAGACAGACTTCCAAG
TAGGATTATTCTCAGGTACAATGGAAAGAACTGCCTCAACAACAATCACCTTTCCATCAT
CAGGAACAGCAGCATAGCAGTTCTTCAAAAGCTTCAAGCAGTGTTCATCACTCCAATCAT
GAAGTATCCACTTCAAAAAGATGGCATCTCCCTTAGGCACCC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002464A_C01 KMC002464A_c01
(642 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JQ2344 catechol O-methyltransferase (EC 2.1.1.6) III - comm... 152 4e-36
gb|AAL91506.1|AF484252_1 caffeic acid O-methyltransferase II [Ni... 152 4e-36
emb|CAD29457.1| caffeic acid O-methyltransferase [Rosa chinensis] 147 2e-34
sp|Q43609|COMT_PRUDU Caffeic acid 3-O-methyltransferase (S-adeno... 145 3e-34
prf||2119166A caffeic acid O-methyltransferase 145 4e-34
>pir||JQ2344 catechol O-methyltransferase (EC 2.1.1.6) III - common tobacco
gi|429114|emb|CAA50561.1| catechol O-methyltransferase
[Nicotiana tabacum]
Length = 365
Score = 152 bits (384), Expect = 4e-36
Identities = 71/108 (65%), Positives = 85/108 (77%)
Frame = -3
Query: 640 VPKGDAIFLKWILHDWSDEHCLKLLKNCYAAVPDDGKVIVVEAVLSIVPENNPTWKSVSQ 461
VP+GDAIF+KWILHDWSD H LKLLKNCY A+PD+GKVIVVEA+L + P+ + VSQ
Sbjct: 258 VPEGDAIFMKWILHDWSDSHNLKLLKNCYKALPDNGKVIVVEAILPVKPDIDTAVVGVSQ 317
Query: 460 IDVMMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRSFWVMEFFK 317
D++MM QNPGGKER+E+EF LAT AGF G+ C V +FWVMEF K
Sbjct: 318 CDLIMMAQNPGGKERSEEEFRALATEAGFKGVNLICCVCNFWVMEFCK 365
>gb|AAL91506.1|AF484252_1 caffeic acid O-methyltransferase II [Nicotiana tabacum]
Length = 364
Score = 152 bits (384), Expect = 4e-36
Identities = 71/108 (65%), Positives = 85/108 (77%)
Frame = -3
Query: 640 VPKGDAIFLKWILHDWSDEHCLKLLKNCYAAVPDDGKVIVVEAVLSIVPENNPTWKSVSQ 461
VP+GDAIF+KWILHDWSD H LKLLKNCY A+PD+GKVIVVEA+L + P+ + VSQ
Sbjct: 257 VPEGDAIFMKWILHDWSDSHNLKLLKNCYKALPDNGKVIVVEAILPVKPDIDTAVVGVSQ 316
Query: 460 IDVMMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRSFWVMEFFK 317
D++MM QNPGGKER+E+EF LAT AGF G+ C V +FWVMEF K
Sbjct: 317 CDLIMMAQNPGGKERSEEEFRALATEAGFKGVNLICCVCNFWVMEFCK 364
>emb|CAD29457.1| caffeic acid O-methyltransferase [Rosa chinensis]
Length = 365
Score = 147 bits (370), Expect = 2e-34
Identities = 67/108 (62%), Positives = 81/108 (74%)
Frame = -3
Query: 640 VPKGDAIFLKWILHDWSDEHCLKLLKNCYAAVPDDGKVIVVEAVLSIVPENNPTWKSVSQ 461
VPKGDAIF+KWI HDWSDEHCLK LKNCYAA+PD+GKVI+ E +L + P+ + K V
Sbjct: 256 VPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDTSLATKGVVH 315
Query: 460 IDVMMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRSFWVMEFFK 317
IDV+M+ NPGGKERTEQEF LA +GF GIR C + +V+EF K
Sbjct: 316 IDVVMLAHNPGGKERTEQEFEALAKGSGFQGIRVACNAFNTYVIEFLK 363
>sp|Q43609|COMT_PRUDU Caffeic acid 3-O-methyltransferase
(S-adenosysl-L-methionine:caffeic acid
3-O-methyltransferase) (COMT) gi|602588|emb|CAA58218.1|
caffeic O-methyltransferase [Prunus dulcis]
Length = 365
Score = 145 bits (367), Expect = 3e-34
Identities = 66/108 (61%), Positives = 80/108 (73%)
Frame = -3
Query: 640 VPKGDAIFLKWILHDWSDEHCLKLLKNCYAAVPDDGKVIVVEAVLSIVPENNPTWKSVSQ 461
VPKGDAIF+KWI HDWSDEHCLK LKNCYAA+PD+GKVI+ E +L + P+++ K V
Sbjct: 256 VPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLATKGVVH 315
Query: 460 IDVMMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRSFWVMEFFK 317
IDV+M+ NPGGKERTEQEF LA AGF G C + +V+EF K
Sbjct: 316 IDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363
>prf||2119166A caffeic acid O-methyltransferase
Length = 365
Score = 145 bits (366), Expect = 4e-34
Identities = 65/108 (60%), Positives = 80/108 (73%)
Frame = -3
Query: 640 VPKGDAIFLKWILHDWSDEHCLKLLKNCYAAVPDDGKVIVVEAVLSIVPENNPTWKSVSQ 461
VPK DA+F+KWI HDWSDEHC+K LKNCY AVPD+GKVIV E +L + P+++ K V
Sbjct: 256 VPKADAVFMKWICHDWSDEHCIKFLKNCYDAVPDNGKVIVAECILPVAPDSSLATKGVVH 315
Query: 460 IDVMMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRSFWVMEFFK 317
IDV+M+ NPGGKERTE+EF LA AAGF G R C + ++MEF K
Sbjct: 316 IDVIMLAHNPGGKERTEKEFEALAKAAGFQGFRVVCCAFNTYIMEFLK 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,802,208
Number of Sequences: 1393205
Number of extensions: 11055119
Number of successful extensions: 37961
Number of sequences better than 10.0: 246
Number of HSP's better than 10.0 without gapping: 30834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36171
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GENf069b07 |
BP061306 |
1 |
364 |
2 |
MR056e10_f |
BP080316 |
35 |
429 |
3 |
MR002a04_f |
BP076045 |
35 |
418 |
4 |
GNf084h02 |
BP073595 |
36 |
574 |
5 |
MWL001e08_f |
AV768596 |
42 |
313 |
6 |
SPD003f05_f |
BP044252 |
215 |
353 |
7 |
GNf030g02 |
BP069567 |
247 |
643 |
|
Lotus japonicus
Kazusa DNA Research Institute