Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002463A_C01 KMC002463A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC07316.1| myosin heavy chain kinase C [Dictyostelium disco... 40 0.024
gb|AAC31918.1| myosin heavy chain kinase C [Dictyostelium discoi... 40 0.024
ref|XP_139213.1| similar to RIKEN cDNA 2410002M20 [Mus musculus] 40 0.031
sp|Q90508|VIT1_FUNHE Vitellogenin I precursor (VTG I) [Contains:... 39 0.068
sp|Q98893|VIT2_FUNHE Vitellogenin II precursor (VTG II) [Contain... 39 0.089
>dbj|BAC07316.1| myosin heavy chain kinase C [Dictyostelium discoideum]
Length = 780
Score = 40.4 bits (93), Expect = 0.024
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = -2
Query: 596 SSRSTRSSSSSISSLSSSYSGNSEVSTTGLSPLSSSLNRNS 474
+S S S+SSS+SS SSS S +S STT +P+S ++RNS
Sbjct: 411 NSSSVNSNSSSVSSSSSSSSSSSSSSTTNAAPISIQVSRNS 451
>gb|AAC31918.1| myosin heavy chain kinase C [Dictyostelium discoideum]
Length = 751
Score = 40.4 bits (93), Expect = 0.024
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = -2
Query: 596 SSRSTRSSSSSISSLSSSYSGNSEVSTTGLSPLSSSLNRNS 474
+S S S+SSS+SS SSS S +S STT +P+S ++RNS
Sbjct: 411 NSSSVNSNSSSVSSSSSSSSSSSSSSTTNAAPISIQVSRNS 451
>ref|XP_139213.1| similar to RIKEN cDNA 2410002M20 [Mus musculus]
Length = 343
Score = 40.0 bits (92), Expect = 0.031
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +1
Query: 439 SNTSCDI-LRRLREFLLSDELNGLRPVVLTSELPEYEDDKDEIEEDEERVDLEEPRIPKN 615
S CDI L RL+++ + +E L V S L E DD + EE+EE D + R+P +
Sbjct: 241 SERVCDIILPRLQKWYVLEEAKQLEHRV--SALEEDMDDVESSEEEEEE-DEKLERVPSS 297
Query: 616 DKKPR--KTLPIPRRSLTLC 669
D + R + L PRRSL LC
Sbjct: 298 DHRRRSYRDLDKPRRSLALC 317
>sp|Q90508|VIT1_FUNHE Vitellogenin I precursor (VTG I) [Contains: Lipovitellin 1 (LV1);
Phosvitin (PV); Lipovitellin 2 (LV2)]
gi|11277189|pir||T43141 vitellogenin 1 - mummichog
gi|459202|gb|AAA93123.1| vitellogenin 1
Length = 1704
Score = 38.9 bits (89), Expect = 0.068
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = -2
Query: 593 SRSTRSSSSSISSLSSSYSGNSEVSTTGLSPLSSSLNRNSRR 468
SRS+ SSSSS SS SSS S +S S++ S SSS +R+SRR
Sbjct: 1131 SRSSSSSSSSSSSSSSSSSSSSRRSSSSSSSSSSSSSRSSRR 1172
Score = 37.4 bits (85), Expect = 0.20
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = -2
Query: 596 SSRSTRSSSSSISSLSSSYSGNSEVSTTGLSPLSSSLNRNSRRRRNMS 453
SSR +RSSSSS SS SSS S +S S S SSS + +SR R ++
Sbjct: 1127 SSRRSRSSSSSSSSSSSSSSSSSSSSRRSSSSSSSSSSSSSRSSRRVN 1174
>sp|Q98893|VIT2_FUNHE Vitellogenin II precursor (VTG II) [Contains: Lipovitellin 1 (LV1);
Phosvitin (PV); Lipovitellin 2 (LV2); YP 69]
gi|11277190|pir||T43144 vitellogenin II precursor -
mummichog gi|1621359|gb|AAB17152.1| vitellogenin II
precursor [Fundulus heteroclitus]
Length = 1687
Score = 38.5 bits (88), Expect = 0.089
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = -2
Query: 599 GSSRSTRSSSSSISSLSSSYSGNSEVSTTGLSPLSSSLNRNSR 471
GSSRS+RS SSS SS SSS S + S++ S SSSL RNS+
Sbjct: 1093 GSSRSSRSRSSSSSSSSSSSSSSRSSSSSSRS--SSSLRRNSK 1133
Score = 34.3 bits (77), Expect = 1.7
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = -2
Query: 608 GIRGSSRSTRSSS-SSISSLSSSYSGNSEVSTTGLSPLSSSLNRNSRR-RRNMSQLVLED 435
G++ S++++ SSS SS SS S S S +S S++ S SSS +R+S RRN L L D
Sbjct: 1080 GLKNSTKASSSSSGSSRSSRSRSSSSSSSSSSSSSSRSSSSSSRSSSSLRRNSKMLDLAD 1139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,261,919
Number of Sequences: 1393205
Number of extensions: 11370969
Number of successful extensions: 74553
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 48239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63944
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
