Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002460A_C01 KMC002460A_c01
(415 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_282571.1| putative nucleotide-sugar epimerase/dehydratase... 30 7.1
ref|NP_506358.1| Putative cytoplasmic protein of eukaryotic orig... 30 9.2
>ref|NP_282571.1| putative nucleotide-sugar epimerase/dehydratase [Campylobacter
jejuni] gi|11270246|pir||F81288 probable
nucleotide-sugar epimerase/dehydratase Cj1430c
[imported] - Campylobacter jejuni (strain NCTC 11168)
gi|6968859|emb|CAB73854.1| putative nucleotide-sugar
epimerase/dehydratase [Campylobacter jejuni subsp.
jejuni NCTC 11168]
Length = 181
Score = 30.0 bits (66), Expect = 7.1
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = -1
Query: 133 DYRVNSPFYLWKKWDRIF*SLKSENCQFLPPKMNSS 26
D R +SP YL KW++ S K++ LPP M +S
Sbjct: 89 DCRKDSPTYL--KWEKFIISYKNQQLILLPPNMGNS 122
>ref|NP_506358.1| Putative cytoplasmic protein of eukaryotic origin [Caenorhabditis
elegans] gi|7498011|pir||T20269 hypothetical protein
C56A3.8 - Caenorhabditis elegans
gi|3875270|emb|CAB01138.1| Hypothetical protein C56A3.8
[Caenorhabditis elegans]
Length = 380
Score = 29.6 bits (65), Expect = 9.2
Identities = 29/113 (25%), Positives = 52/113 (45%), Gaps = 14/113 (12%)
Frame = +2
Query: 95 FFPKIKRTIYSIVSIQMLHKQNFLCHLDYNLML--SLSESNIRVLKLQTQ*LKEVICYQM 268
F P ++R + S+++ Q +H+ LC +D + ++ SN ++ Q + ++ I
Sbjct: 248 FDPVLRRHVLSLLTPQFVHR---LC-VDLKKLFRHGIASSNYMLVNSQLRVVRGQIWNLR 303
Query: 269 SIITNHSSSSELAYAKP-----------SNPPPELLILGLASAS-CDPDERSS 391
I + S E+A P SNPPP ++GL S+ P+ SS
Sbjct: 304 QAILANESPGEMACRDPIIVSRSSDIVMSNPPPPRGMIGLLSSHLATPNNNSS 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 330,863,953
Number of Sequences: 1393205
Number of extensions: 6137781
Number of successful extensions: 14066
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14063
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
