Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002454A_C01 KMC002454A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_625773.1| putative secreted protein [Streptomyces coelico... 36 0.30
gb|EAA06779.1| ebiP1657 [Anopheles gambiae str. PEST] 36 0.30
emb|CAB76957.1| alpha-gliadin [Triticum aestivum] 36 0.30
emb|CAB76954.1| alpha-gliadin [Triticum aestivum] 36 0.30
ref|NP_567290.1| putative protein; protein id: At4g05150.1, supp... 35 0.51
>ref|NP_625773.1| putative secreted protein [Streptomyces coelicolor A3(2)]
gi|8249952|emb|CAB93373.1| putative secreted protein
[Streptomyces coelicolor A3(2)]
Length = 295
Score = 36.2 bits (82), Expect = 0.30
Identities = 25/73 (34%), Positives = 31/73 (42%)
Frame = -1
Query: 550 PMQAPYPFVQQPYHAVVPAQVPVGYHQYVPGSGQVYSPGVRHVSPGQPFSPTAAVHDALR 371
P+ +P P QP H VP P +H PG Q +P V +PG P +P H
Sbjct: 4 PVGSPLPPPHQPGHGPVPGWSPAAHH---PGPPQGPAP-VPPPAPGYPMAPRPVPHPG-- 57
Query: 370 QRVYQAVHSGPVP 332
A H GP P
Sbjct: 58 --PAPAPHPGPAP 68
>gb|EAA06779.1| ebiP1657 [Anopheles gambiae str. PEST]
Length = 284
Score = 36.2 bits (82), Expect = 0.30
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = -3
Query: 566 AGPTSSYAGALSFCAT-----AISCGGASSGSSWVPSICTGFGSSL*SGCQACEPGSTIQ 402
A +SS A + S CA+ A SC ++ SS S C+ SS SG +C G+T
Sbjct: 177 ASSSSSCASSCSSCASSCSSCASSCSSGTTSSSSCASSCSSSTSSSSSGTTSCSSGTTSS 236
Query: 401 SHGGGSRRVEAACVSSCALRSRS 333
S C SSC+ + S
Sbjct: 237 S----------CCTSSCSSSTSS 249
Score = 33.5 bits (75), Expect = 1.9
Identities = 22/75 (29%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Frame = -3
Query: 554 SSYAGALSFCATAISCGGASSGSSWVPSICTGFGSSL*SGCQACEPG-STIQSHGGGSRR 378
S + S CA++ S +SS S+ S C SS S C +C S+ S
Sbjct: 147 SCCTSSCSSCASSCSSCASSSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTT 206
Query: 377 VEAACVSSCALRSRS 333
++C SSC+ + S
Sbjct: 207 SSSSCASSCSSSTSS 221
Score = 33.5 bits (75), Expect = 1.9
Identities = 27/84 (32%), Positives = 37/84 (43%), Gaps = 10/84 (11%)
Frame = -3
Query: 569 SAGPTSSYAGALSFCATAISCG--------GASSGSSWVPSI--CTGFGSSL*SGCQACE 420
S+G TSS + A S ++ SC G SS SS S CT SS S C +C
Sbjct: 105 SSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSSCSSCTTSCSCCTSSCSSCASSCSSCA 164
Query: 419 PGSTIQSHGGGSRRVEAACVSSCA 348
S+ + ++C SSC+
Sbjct: 165 SSSSSTTSCSCCASSSSSCASSCS 188
>emb|CAB76957.1| alpha-gliadin [Triticum aestivum]
Length = 265
Score = 36.2 bits (82), Expect = 0.30
Identities = 24/74 (32%), Positives = 32/74 (42%), Gaps = 2/74 (2%)
Frame = -1
Query: 565 PVQPVPMQAPYPFVQQPYHAV--VPAQVPVGYHQYVPGSGQVYSPGVRHVSPGQPFSPTA 392
P QP P Q P+P QQPY P Q+P Q P P ++ P QP S
Sbjct: 41 PQQPYPHQQPFPS-QQPYPQPQPFPPQLPYPQTQPFPPQQPYPQPQPQYPQPQQPISQQQ 99
Query: 391 AVHDALRQRVYQAV 350
A +Q++ Q +
Sbjct: 100 AQQQQQQQQILQQI 113
>emb|CAB76954.1| alpha-gliadin [Triticum aestivum]
Length = 265
Score = 36.2 bits (82), Expect = 0.30
Identities = 24/74 (32%), Positives = 32/74 (42%), Gaps = 2/74 (2%)
Frame = -1
Query: 565 PVQPVPMQAPYPFVQQPYHAV--VPAQVPVGYHQYVPGSGQVYSPGVRHVSPGQPFSPTA 392
P QP P Q P+P QQPY P Q+P Q P P ++ P QP S
Sbjct: 41 PQQPYPHQQPFPS-QQPYPQPQPFPPQLPYPQTQPFPPQQPYPQPQPQYPQPQQPISQQQ 99
Query: 391 AVHDALRQRVYQAV 350
A +Q++ Q +
Sbjct: 100 AQQQQQQQQILQQI 113
>ref|NP_567290.1| putative protein; protein id: At4g05150.1, supported by cDNA:
gi_15809939 [Arabidopsis thaliana]
gi|15809940|gb|AAL06897.1| AT4g05150/C17L7_70
[Arabidopsis thaliana]
Length = 477
Score = 35.4 bits (80), Expect = 0.51
Identities = 28/79 (35%), Positives = 35/79 (43%), Gaps = 4/79 (5%)
Frame = -1
Query: 550 PMQAPYPFVQQPYHAVVPAQVPVGYHQ----YVPGSGQVYSPGVRHVSPGQPFSPTAAVH 383
P+Q P ++QQ +H VP+GYHQ + G GQVY VR V AV
Sbjct: 384 PVQMPGQYLQQYHH------VPMGYHQPQTHQMAGPGQVYGGTVRPV--------MMAVD 429
Query: 382 DALRQRVYQAVHSGPVPVY 326
R Y GPV +Y
Sbjct: 430 GMNRTGYYGMKTPGPVQMY 448
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,470,953
Number of Sequences: 1393205
Number of extensions: 12283321
Number of successful extensions: 42987
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 39312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42604
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
