Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002450A_C01 KMC002450A_c01
(727 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC84114.1| hypothetical protein [Gossypium hirsutum] 109 4e-23
gb|AAK52925.1| salicylic acid-induced fragment 1 protein [Gossyp... 109 4e-23
gb|AAL36294.1| unknown protein [Arabidopsis thaliana] 96 5e-19
ref|NP_564017.1| expressed protein; protein id: At1g17200.1, sup... 96 5e-19
ref|NP_188055.1| unknown protein; protein id: At3g14380.1 [Arabi... 84 2e-15
>emb|CAC84114.1| hypothetical protein [Gossypium hirsutum]
Length = 207
Score = 109 bits (272), Expect = 4e-23
Identities = 56/112 (50%), Positives = 71/112 (63%)
Frame = +1
Query: 94 SKTTSRAKYASIYVPSLLTYIILAAGALSMEVLYLTEKGDPPAAWSSACGYFGPFGHKAT 273
S +T + + +LTY+IL A A+S EVLYL KGD WS+ACG F F HKAT
Sbjct: 102 SPSTMPRAWTFFLLDQILTYVILGAAAVSTEVLYLANKGDSAITWSAACGTFAGFCHKAT 161
Query: 274 ASIAITLVAVICYVVLSLISSYKLFSKYDAPAPPMSNSNNNNKGIDIAPFHG 429
++ IT VAVICY VLSL+SSY+LF+K+DAP N +K I+ FHG
Sbjct: 162 IAVVITFVAVICYAVLSLVSSYRLFTKFDAPV------NYPSKTIEATVFHG 207
>gb|AAK52925.1| salicylic acid-induced fragment 1 protein [Gossypium hirsutum]
Length = 169
Score = 109 bits (272), Expect = 4e-23
Identities = 56/112 (50%), Positives = 71/112 (63%)
Frame = +1
Query: 94 SKTTSRAKYASIYVPSLLTYIILAAGALSMEVLYLTEKGDPPAAWSSACGYFGPFGHKAT 273
S +T + + +LTY+IL A A+S EVLYL KGD WS+ACG F F HKAT
Sbjct: 37 SPSTMPRAWTFFLLDQILTYVILGAAAVSTEVLYLANKGDSAITWSAACGTFAGFCHKAT 96
Query: 274 ASIAITLVAVICYVVLSLISSYKLFSKYDAPAPPMSNSNNNNKGIDIAPFHG 429
++ IT VAVICY VLSL+SSY+LF+K+DAP N +K I+ FHG
Sbjct: 97 IAVVITFVAVICYAVLSLVSSYRLFTKFDAPV------NYPSKTIEATVFHG 142
>gb|AAL36294.1| unknown protein [Arabidopsis thaliana]
Length = 204
Score = 95.9 bits (237), Expect = 5e-19
Identities = 47/92 (51%), Positives = 61/92 (66%)
Frame = +1
Query: 94 SKTTSRAKYASIYVPSLLTYIILAAGALSMEVLYLTEKGDPPAAWSSACGYFGPFGHKAT 273
S +T + + LLTY++LAAGA+S EVLYL GD WS AC +G F H+AT
Sbjct: 98 SSSTMPRVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDACSSYGGFCHRAT 157
Query: 274 ASIAITLVAVICYVVLSLISSYKLFSKYDAPA 369
AS+ IT V Y+VLSLISSYKLF+++D P+
Sbjct: 158 ASVIITFFVVCFYIVLSLISSYKLFTRFDPPS 189
>ref|NP_564017.1| expressed protein; protein id: At1g17200.1, supported by cDNA:
28177., supported by cDNA: gi_17380963 [Arabidopsis
thaliana] gi|25511643|pir||B86308 F20D23.10 protein -
Arabidopsis thaliana gi|5734748|gb|AAD50013.1|AC007651_8
Unknown protein [Arabidopsis thaliana]
gi|21555505|gb|AAM63874.1| unknown [Arabidopsis
thaliana] gi|23297373|gb|AAN12953.1| unknown protein
[Arabidopsis thaliana]
Length = 204
Score = 95.9 bits (237), Expect = 5e-19
Identities = 47/92 (51%), Positives = 61/92 (66%)
Frame = +1
Query: 94 SKTTSRAKYASIYVPSLLTYIILAAGALSMEVLYLTEKGDPPAAWSSACGYFGPFGHKAT 273
S +T + + LLTY++LAAGA+S EVLYL GD WS AC +G F H+AT
Sbjct: 98 SSSTMPRVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDACSSYGGFCHRAT 157
Query: 274 ASIAITLVAVICYVVLSLISSYKLFSKYDAPA 369
AS+ IT V Y+VLSLISSYKLF+++D P+
Sbjct: 158 ASVIITFFVVCFYIVLSLISSYKLFTRFDPPS 189
>ref|NP_188055.1| unknown protein; protein id: At3g14380.1 [Arabidopsis thaliana]
gi|9279585|dbj|BAB01043.1|
gb|AAD50013.1~gene_id:MLN21.16~similar to unknown
protein [Arabidopsis thaliana]
Length = 178
Score = 84.0 bits (206), Expect = 2e-15
Identities = 41/92 (44%), Positives = 60/92 (64%)
Frame = +1
Query: 91 ISKTTSRAKYASIYVPSLLTYIILAAGALSMEVLYLTEKGDPPAAWSSACGYFGPFGHKA 270
ISK R + + ++TY++LAAGA+S E +YL G+ P WSSAC +G F H A
Sbjct: 90 ISKVQVRTLFL---LDQVVTYVVLAAGAVSAETVYLAYYGNIPITWSSACDSYGSFCHNA 146
Query: 271 TASIAITLVAVICYVVLSLISSYKLFSKYDAP 366
S+ T V + Y++LSLISSY+LF++++AP
Sbjct: 147 LISVVFTFVVSLLYMLLSLISSYRLFTRFEAP 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,993,135
Number of Sequences: 1393205
Number of extensions: 12939269
Number of successful extensions: 34476
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34377
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
