Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002449A_C01 KMC002449A_c01
(1125 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P93348|TF2D_TOBAC Transcription initiation factor TFIID (TATA... 87 4e-16
gb|AAD10238.1| TATA-box binding protein [Phaseolus vulgaris] 87 4e-16
sp|Q42808|TF2D_SOYBN Transcription initiation factor TFIID (TATA... 87 4e-16
gb|AAD10237.1| TATA-box binding protein [Phaseolus vulgaris] 87 4e-16
sp|P26357|TF2D_SOLTU Transcription initiation factor TFIID (TATA... 87 6e-16
>sp|P93348|TF2D_TOBAC Transcription initiation factor TFIID (TATA-box factor) (TATA
sequence-binding protein) (TBP)
gi|1498162|dbj|BAA13156.1| TATA binding protein (TBP)
[Nicotiana tabacum]
Length = 200
Score = 87.4 bits (215), Expect = 4e-16
Identities = 44/53 (83%), Positives = 46/53 (86%)
Frame = -3
Query: 901 FQGLYTV*SNPRLVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 743
F GL P++VLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct: 148 FPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200
Score = 36.6 bits (83), Expect = 0.74
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -2
Query: 917 YEPEPFPGLIYRMKQPQ 867
YEPE FPGLIYRMKQP+
Sbjct: 143 YEPELFPGLIYRMKQPK 159
>gb|AAD10238.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 87.4 bits (215), Expect = 4e-16
Identities = 44/53 (83%), Positives = 46/53 (86%)
Frame = -3
Query: 901 FQGLYTV*SNPRLVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 743
F GL P++VLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct: 148 FPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200
Score = 36.6 bits (83), Expect = 0.74
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -2
Query: 917 YEPEPFPGLIYRMKQPQ 867
YEPE FPGLIYRMKQP+
Sbjct: 143 YEPELFPGLIYRMKQPK 159
>sp|Q42808|TF2D_SOYBN Transcription initiation factor TFIID (TATA-box factor) (TATA
sequence-binding protein) (TBP)
gi|1220522|gb|AAA91948.1| TATA-box binding protein
Length = 200
Score = 87.4 bits (215), Expect = 4e-16
Identities = 44/53 (83%), Positives = 46/53 (86%)
Frame = -3
Query: 901 FQGLYTV*SNPRLVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 743
F GL P++VLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct: 148 FPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200
Score = 36.6 bits (83), Expect = 0.74
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -2
Query: 917 YEPEPFPGLIYRMKQPQ 867
YEPE FPGLIYRMKQP+
Sbjct: 143 YEPELFPGLIYRMKQPK 159
>gb|AAD10237.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 87.4 bits (215), Expect = 4e-16
Identities = 44/53 (83%), Positives = 46/53 (86%)
Frame = -3
Query: 901 FQGLYTV*SNPRLVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 743
F GL P++VLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct: 148 FPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 200
Score = 36.6 bits (83), Expect = 0.74
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -2
Query: 917 YEPEPFPGLIYRMKQPQ 867
YEPE FPGLIYRMKQP+
Sbjct: 143 YEPELFPGLIYRMKQPK 159
>sp|P26357|TF2D_SOLTU Transcription initiation factor TFIID (TATA-box factor) (TATA
sequence-binding protein) (TBP) gi|72901|pir||TWPO2D
transcription initiation factor IID - potato
gi|21581|emb|CAA44360.1| TATA-binding protein [Solanum
tuberosum]
Length = 200
Score = 86.7 bits (213), Expect = 6e-16
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = -3
Query: 901 FQGLYTV*SNPRLVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ 743
F GL P++VLLIFVSGKIV+TGAKVRDETYTAFENIYPVLTEFRKNQQ
Sbjct: 148 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKNQQ 200
Score = 36.6 bits (83), Expect = 0.74
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -2
Query: 917 YEPEPFPGLIYRMKQPQ 867
YEPE FPGLIYRMKQP+
Sbjct: 143 YEPELFPGLIYRMKQPK 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 948,015,012
Number of Sequences: 1393205
Number of extensions: 20985664
Number of successful extensions: 44301
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 42306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44254
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 68360116878
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
