Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002448A_C01 KMC002448A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA67092.1| peroxidase [Arabidopsis thaliana] 68 7e-11
gb|AAM65571.1| peroxidase ATP N [Arabidopsis thaliana] 68 7e-11
ref|NP_568385.1| peroxidase, putative; protein id: At5g19890.1, ... 68 7e-11
pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N gi|7245407... 68 7e-11
pir||T04344 peroxidase (EC 1.11.1.7) (clone prxRPA) - rice gi|18... 67 1e-10
>emb|CAA67092.1| peroxidase [Arabidopsis thaliana]
Length = 328
Score = 67.8 bits (164), Expect = 7e-11
Identities = 34/58 (58%), Positives = 45/58 (76%)
Frame = -3
Query: 506 SDQILFSSDAANSTTKPLVQSYSNNAALFFVDFVNSMIKMGNINPTDSGSDGEIRKNC 333
SDQILFSSD A +TTK LV++YS + +LFF DF +MI+MGNI+ +G+ GE+R NC
Sbjct: 269 SDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS---NGASGEVRTNC 323
>gb|AAM65571.1| peroxidase ATP N [Arabidopsis thaliana]
Length = 328
Score = 67.8 bits (164), Expect = 7e-11
Identities = 34/58 (58%), Positives = 45/58 (76%)
Frame = -3
Query: 506 SDQILFSSDAANSTTKPLVQSYSNNAALFFVDFVNSMIKMGNINPTDSGSDGEIRKNC 333
SDQILFSSD A +TTK LV++YS + +LFF DF +MI+MGNI+ +G+ GE+R NC
Sbjct: 269 SDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS---NGASGEVRTNC 323
>ref|NP_568385.1| peroxidase, putative; protein id: At5g19890.1, supported by cDNA:
40493. [Arabidopsis thaliana]
gi|26397630|sp|Q39034|PE59_ARATH Peroxidase 59 precursor
(Atperox P59) (Peroxidase N) (ATPN)
gi|21703112|gb|AAM74498.1| AT5g19890/F28I16_40
[Arabidopsis thaliana] gi|23308363|gb|AAN18151.1|
At5g19890/F28I16_40 [Arabidopsis thaliana]
Length = 328
Score = 67.8 bits (164), Expect = 7e-11
Identities = 34/58 (58%), Positives = 45/58 (76%)
Frame = -3
Query: 506 SDQILFSSDAANSTTKPLVQSYSNNAALFFVDFVNSMIKMGNINPTDSGSDGEIRKNC 333
SDQILFSSD A +TTK LV++YS + +LFF DF +MI+MGNI+ +G+ GE+R NC
Sbjct: 269 SDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS---NGASGEVRTNC 323
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N gi|7245407|pdb|1QGJ|B
Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 67.8 bits (164), Expect = 7e-11
Identities = 34/58 (58%), Positives = 45/58 (76%)
Frame = -3
Query: 506 SDQILFSSDAANSTTKPLVQSYSNNAALFFVDFVNSMIKMGNINPTDSGSDGEIRKNC 333
SDQILFSSD A +TTK LV++YS + +LFF DF +MI+MGNI+ +G+ GE+R NC
Sbjct: 241 SDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS---NGASGEVRTNC 295
>pir||T04344 peroxidase (EC 1.11.1.7) (clone prxRPA) - rice
gi|1853974|dbj|BAA03372.1| putative peroxidase [Oryza
sativa (japonica cultivar-group)]
Length = 326
Score = 67.0 bits (162), Expect = 1e-10
Identities = 35/58 (60%), Positives = 43/58 (73%)
Frame = -3
Query: 506 SDQILFSSDAANSTTKPLVQSYSNNAALFFVDFVNSMIKMGNINPTDSGSDGEIRKNC 333
SDQ LFSSD + TK LV++YS +A FF DF SM+KMGNI+P +G DG+IRKNC
Sbjct: 266 SDQGLFSSDDGIANTKELVETYSADAHKFFWDFGRSMVKMGNISPL-TGDDGQIRKNC 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,894,958
Number of Sequences: 1393205
Number of extensions: 8664834
Number of successful extensions: 17340
Number of sequences better than 10.0: 359
Number of HSP's better than 10.0 without gapping: 16505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17141
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
