Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002445A_C01 KMC002445A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S71454 farnesyl-pyrophosphate synthetase - Para rubber tree... 150 5e-43
sp|P49351|FPP1_LUPAL Farnesyl pyrophosphate synthetase 1 (FPP sy... 158 5e-38
gb|AAK68152.1| farnesyldiphosphate synthase [x Citrofortunella m... 132 4e-37
dbj|BAB16687.2| putative FPP synthase 1 [Eucommia ulmoides] 138 5e-37
dbj|BAB60821.1| putative FPP synthase 1 [Eucommia ulmoides] 138 5e-37
>pir||S71454 farnesyl-pyrophosphate synthetase - Para rubber tree
gi|22676905|gb|AAM98379.1| farnesyl diphosphate synthase
[Hevea brasiliensis]
Length = 342
Score = 150 bits (380), Expect(2) = 5e-43
Identities = 68/88 (77%), Positives = 81/88 (91%)
Frame = -2
Query: 565 DDYLDCFGDPQTIGKIGTDIEDYKCSWLAVKAVELSNEEQKKVLYENYGRPDPENVAKVK 386
DDYLDCFGDP+TIGKIGTDIED+KCSWL VKA+EL NEEQKKVLYE+YG+ DP +VAKVK
Sbjct: 232 DDYLDCFGDPETIGKIGTDIEDFKCSWLVVKALELCNEEQKKVLYEHYGKADPASVAKVK 291
Query: 385 VLYNKLNLQGVFAEYESSTYEKLVSSLD 302
VLYN+L LQGVF EYE+ +Y+KLV+S++
Sbjct: 292 VLYNELKLQGVFTEYENESYKKLVTSIE 319
Score = 45.4 bits (106), Expect(2) = 5e-43
Identities = 22/31 (70%), Positives = 25/31 (79%)
Frame = -3
Query: 324 RSL*APLTAHPSKAVQAVLKSFLAKIYKREK 232
+ L + AHPSK VQAVLKSFLAKIYKR+K
Sbjct: 312 KKLVTSIEAHPSKPVQAVLKSFLAKIYKRQK 342
>sp|P49351|FPP1_LUPAL Farnesyl pyrophosphate synthetase 1 (FPP synthetase 1) (FPS 1)
(Farnesyl diphosphate synthetase 1) [Includes:
Dimethylallyltransferase ; Geranyltranstransferase ]
gi|2129849|pir||S66470 farnesyl-pyrophosphate synthetase
fps1 - white lupine gi|558923|gb|AAA86687.1| farnesyl
pyrophosphate synthase
Length = 342
Score = 158 bits (399), Expect = 5e-38
Identities = 73/104 (70%), Positives = 89/104 (85%)
Frame = -2
Query: 565 DDYLDCFGDPQTIGKIGTDIEDYKCSWLAVKAVELSNEEQKKVLYENYGRPDPENVAKVK 386
DDYLDCFG P+TIGKIGTDIED+KCSWL VKA+ELSN+EQKKVLY+NYG+PDP NVAKVK
Sbjct: 232 DDYLDCFGAPETIGKIGTDIEDFKCSWLVVKALELSNDEQKKVLYDNYGKPDPANVAKVK 291
Query: 385 VLYNKLNLQGVFAEYESSTYEKLVSSLDRSS*QSSSSCLEVLLG 254
LY++LNLQGVF EYES +YEKLV+S++ ++ + L+ LG
Sbjct: 292 ALYDELNLQGVFTEYESKSYEKLVTSIEAHPSKAVQALLKSFLG 335
Score = 44.7 bits (104), Expect = 8e-04
Identities = 27/81 (33%), Positives = 39/81 (47%)
Frame = -3
Query: 474 KQWNLAMKNKRKFYMKTMGDQIQKMLLK*RSCITSLIFRVYLLSMRARPMRSL*APLTAH 295
K L+ ++K G + K ++ L + ++ L + AH
Sbjct: 262 KALELSNDEQKKVLYDNYGKPDPANVAKVKALYDELNLQGVFTEYESKSYEKLVTSIEAH 321
Query: 294 PSKAVQAVLKSFLAKIYKREK 232
PSKAVQA+LKSFL KIYKR+K
Sbjct: 322 PSKAVQALLKSFLGKIYKRQK 342
>gb|AAK68152.1| farnesyldiphosphate synthase [x Citrofortunella microcarpa]
Length = 341
Score = 132 bits (333), Expect(2) = 4e-37
Identities = 59/88 (67%), Positives = 71/88 (80%)
Frame = -2
Query: 565 DDYLDCFGDPQTIGKIGTDIEDYKCSWLAVKAVELSNEEQKKVLYENYGRPDPENVAKVK 386
DD+LDCFG P+ IGK+GTDIEDYKCSWL VKA+EL NEEQK V++ENYG+ DP VAKVK
Sbjct: 231 DDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKNVVHENYGKVDPACVAKVK 290
Query: 385 VLYNKLNLQGVFAEYESSTYEKLVSSLD 302
LY L+L+G F EYE +YEKL S++
Sbjct: 291 ELYKTLDLEGAFVEYEKESYEKLTKSIE 318
Score = 43.9 bits (102), Expect(2) = 4e-37
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -3
Query: 306 LTAHPSKAVQAVLKSFLAKIYKREK 232
+ AHP+K VQAVLKSFLAKIYKR+K
Sbjct: 317 IEAHPTKEVQAVLKSFLAKIYKRQK 341
>dbj|BAB16687.2| putative FPP synthase 1 [Eucommia ulmoides]
Length = 348
Score = 138 bits (347), Expect(2) = 5e-37
Identities = 62/88 (70%), Positives = 74/88 (83%)
Frame = -2
Query: 565 DDYLDCFGDPQTIGKIGTDIEDYKCSWLAVKAVELSNEEQKKVLYENYGRPDPENVAKVK 386
DDYLDCFGDP+ IGKIG+DIED+KC+WL VKA+EL NEEQKK+LY+NYG+ DPE+VA+VK
Sbjct: 238 DDYLDCFGDPEVIGKIGSDIEDFKCTWLVVKALELCNEEQKKILYDNYGKKDPESVARVK 297
Query: 385 VLYNKLNLQGVFAEYESSTYEKLVSSLD 302
LY L LQ VF EYE T+EKL S+D
Sbjct: 298 DLYKTLKLQDVFEEYEKKTHEKLNKSID 325
Score = 38.1 bits (87), Expect(2) = 5e-37
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -3
Query: 306 LTAHPSKAVQAVLKSFLAKIYKREK 232
+ A+PSKAVQAVL+SFLAKI++R K
Sbjct: 324 IDAYPSKAVQAVLQSFLAKIHRRLK 348
>dbj|BAB60821.1| putative FPP synthase 1 [Eucommia ulmoides]
Length = 305
Score = 138 bits (347), Expect(2) = 5e-37
Identities = 62/88 (70%), Positives = 74/88 (83%)
Frame = -2
Query: 565 DDYLDCFGDPQTIGKIGTDIEDYKCSWLAVKAVELSNEEQKKVLYENYGRPDPENVAKVK 386
DDYLDCFGDP+ IGKIG+DIED+KC+WL VKA+EL NEEQKK+LY+NYG+ DPE+VA+VK
Sbjct: 195 DDYLDCFGDPEVIGKIGSDIEDFKCTWLVVKALELCNEEQKKILYDNYGKKDPESVARVK 254
Query: 385 VLYNKLNLQGVFAEYESSTYEKLVSSLD 302
LY L LQ VF EYE T+EKL S+D
Sbjct: 255 DLYKTLKLQDVFEEYEKKTHEKLNKSID 282
Score = 38.1 bits (87), Expect(2) = 5e-37
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -3
Query: 306 LTAHPSKAVQAVLKSFLAKIYKREK 232
+ A+PSKAVQAVL+SFLAKI++R K
Sbjct: 281 IDAYPSKAVQAVLQSFLAKIHRRLK 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,142,269
Number of Sequences: 1393205
Number of extensions: 8202775
Number of successful extensions: 22942
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 22239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22917
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
