Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002442A_C01 KMC002442A_c01
(678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM29265.1| AT15471p [Drosophila melanogaster] 34 2.1
ref|NP_588246.1| putative hydroxyacylglutathione hydrolase [Schi... 33 2.7
ref|NP_608666.1| CG17237-PA [Drosophila melanogaster] gi|7295974... 33 2.7
dbj|BAC33823.1| unnamed protein product [Mus musculus] 33 4.7
dbj|BAA93599.1| ORF3 [TTV-like mini virus] 32 6.1
>gb|AAM29265.1| AT15471p [Drosophila melanogaster]
Length = 192
Score = 33.9 bits (76), Expect = 2.1
Identities = 42/194 (21%), Positives = 74/194 (37%), Gaps = 10/194 (5%)
Frame = +1
Query: 61 YPHSLNETCSFTHKNLRRKG--TGPPARPKVRLNNQSCEVSIYMGRKIPSYNKRQEKNLS 234
+P S+ + + N +R+G T PP PK + +I++G NK ++L
Sbjct: 10 HPSSIRPSSTTPDCNQKRRGDMTAPPPNPKPEKSRIMEMHAIFLGHDTRGDNKISIRHLG 69
Query: 235 --FPPFSNEDESCRLSTTTDQYEANKMQRIRMMAEQGAVSSMYNTITCI*QFKHHHQSCS 408
+S QYEA+ MQRI G SS+ KH
Sbjct: 70 HCLRAMGATPTEAMVSKHVRQYEASTMQRICFDEVMGIYSSL---------GKHG----G 116
Query: 409 VTSPRSISLILDNSLSELRLVHLYPESHLQTS*KRKISAR------KLNAYIIIRGRLND 570
+ SP+ + D +S LR+ + R+I + + +++GR+N
Sbjct: 117 MLSPKKKQIEADQFVSSLRVFDTDKSGWIPAIRLRRILTKTGECMGSMEVDELLQGRINK 176
Query: 571 YSCFSYQLLLHCLL 612
Y+ L+ ++
Sbjct: 177 EGLVDYKKLVQDII 190
>ref|NP_588246.1| putative hydroxyacylglutathione hydrolase [Schizosaccharomyces
pombe] gi|7492663|pir||T40964 probable
hydroxyacylglutathione hydrolase - fission yeast
(Schizosaccharomyces pombe) gi|3810866|emb|CAA21784.1|
putative hydroxyacylglutathione hydrolase
[Schizosaccharomyces pombe]
Length = 256
Score = 33.5 bits (75), Expect = 2.7
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +1
Query: 31 PCH*RKYICSYPHSLNETCSFTHKNLRRKGTG 126
PCH R IC Y HS NE FT L G G
Sbjct: 116 PCHTRDSICFYAHSSNEHAVFTGDTLFNAGCG 147
>ref|NP_608666.1| CG17237-PA [Drosophila melanogaster] gi|7295974|gb|AAF51272.1|
CG17237-PA [Drosophila melanogaster]
Length = 192
Score = 33.5 bits (75), Expect = 2.7
Identities = 42/194 (21%), Positives = 74/194 (37%), Gaps = 10/194 (5%)
Frame = +1
Query: 61 YPHSLNETCSFTHKNLRRKG--TGPPARPKVRLNNQSCEVSIYMGRKIPSYNKRQEKNLS 234
+P S+ + + N +R+G T PP PK + +I++G NK ++L
Sbjct: 10 HPSSIRPSSTTPDCNQKRRGDMTAPPPNPKPEKSRIMEMHAIFLGHDTRGDNKISIRHLG 69
Query: 235 --FPPFSNEDESCRLSTTTDQYEANKMQRIRMMAEQGAVSSMYNTITCI*QFKHHHQSCS 408
+S QYEA+ MQRI G SS+ KH
Sbjct: 70 HCLRAMGATPTEAMVSKHVRQYEASTMQRICFDEVMGIYSSL---------GKHG----G 116
Query: 409 VTSPRSISLILDNSLSELRLVHLYPESHLQTS*KRKISAR------KLNAYIIIRGRLND 570
+ SP+ + D +S LR+ + R+I + + +++GR+N
Sbjct: 117 MLSPKKKQIEADQFVSSLRVFDTDKSGWIPAIRLRRILTKTGECMGSMEVDELLQGRINK 176
Query: 571 YSCFSYQLLLHCLL 612
Y+ L+ ++
Sbjct: 177 DGLVDYKKLVQDII 190
>dbj|BAC33823.1| unnamed protein product [Mus musculus]
Length = 112
Score = 32.7 bits (73), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 26 NIHATRGSTYVHIHIH*TKHVHSHI 100
N+ RG ++HIHIH H+H HI
Sbjct: 42 NVSIFRGKNHIHIHIHIHIHIHIHI 66
>dbj|BAA93599.1| ORF3 [TTV-like mini virus]
Length = 131
Score = 32.3 bits (72), Expect = 6.1
Identities = 21/90 (23%), Positives = 38/90 (41%)
Frame = +1
Query: 154 NNQSCEVSIYMGRKIPSYNKRQEKNLSFPPFSNEDESCRLSTTTDQYEANKMQRIRMMAE 333
N ++ + I + + S ++ +KN++F +NE +S + D + K+Q I E
Sbjct: 25 NKKNSPIPITSSKNLRSRIQKHQKNITFTNLTNETDSLQTQLQKDLKKTLKLQNILQNME 84
Query: 334 QGAVSSMYNTITCI*QFKHHHQSCSVTSPR 423
Q S Y+ HH+ PR
Sbjct: 85 QKTSSYKYS----------HHKKHKRRQPR 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,830,578
Number of Sequences: 1393205
Number of extensions: 12164377
Number of successful extensions: 27622
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27501
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
