Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002441A_C01 KMC002441A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA71502.1| chloroplast thylakoidal processing peptidase [Ar... 119 5e-26
ref|NP_180603.1| putative signal peptidase I; protein id: At2g30... 119 5e-26
ref|NP_172171.1| chloroplast thylakoidal processing peptidase, p... 112 5e-24
gb|AAM62715.1| chloroplast thylakoidal processing peptidase, put... 112 5e-24
ref|NP_189102.1| chloroplast thylakoidal processing peptidase, p... 92 5e-18
>emb|CAA71502.1| chloroplast thylakoidal processing peptidase [Arabidopsis thaliana]
gi|22135950|gb|AAM91557.1| putative signal peptidase I
[Arabidopsis thaliana]
Length = 340
Score = 119 bits (297), Expect = 5e-26
Identities = 49/64 (76%), Positives = 62/64 (96%)
Frame = -3
Query: 685 EEDYVLEPLNYELDRMVVPKGHVYVLGDHRNRSFDSHNWGPLPVENILGRSMFRYWPPSR 506
EED+VLEP++YE++ M VPKG+V+VLGD+RN+SFDSHNWGPLP+ENI+GRS+FRYWPPS+
Sbjct: 262 EEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSK 321
Query: 505 VSDT 494
VSDT
Sbjct: 322 VSDT 325
>ref|NP_180603.1| putative signal peptidase I; protein id: At2g30440.1 [Arabidopsis
thaliana] gi|25408074|pir||E84708 probable signal
peptidase I [imported] - Arabidopsis thaliana
gi|1946373|gb|AAB63091.1| putative signal peptidase I
[Arabidopsis thaliana]
Length = 250
Score = 119 bits (297), Expect = 5e-26
Identities = 49/64 (76%), Positives = 62/64 (96%)
Frame = -3
Query: 685 EEDYVLEPLNYELDRMVVPKGHVYVLGDHRNRSFDSHNWGPLPVENILGRSMFRYWPPSR 506
EED+VLEP++YE++ M VPKG+V+VLGD+RN+SFDSHNWGPLP+ENI+GRS+FRYWPPS+
Sbjct: 172 EEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSK 231
Query: 505 VSDT 494
VSDT
Sbjct: 232 VSDT 235
>ref|NP_172171.1| chloroplast thylakoidal processing peptidase, putative; protein id:
At1g06870.1, supported by cDNA: 15392. [Arabidopsis
thaliana] gi|25406944|pir||E86203 probable signal
peptidase [imported] - Arabidopsis thaliana
gi|7523697|gb|AAF63136.1|AC011001_6 putative signal
peptidase [Arabidopsis thaliana]
Length = 367
Score = 112 bits (280), Expect = 5e-24
Identities = 45/62 (72%), Positives = 60/62 (96%)
Frame = -3
Query: 682 EDYVLEPLNYELDRMVVPKGHVYVLGDHRNRSFDSHNWGPLPVENILGRSMFRYWPPSRV 503
ED+VLEP++YE++ M VP+G+V+VLGD+RN+SFDSHNWGPLP++NI+GRS+FRYWPPS+V
Sbjct: 290 EDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPSKV 349
Query: 502 SD 497
SD
Sbjct: 350 SD 351
>gb|AAM62715.1| chloroplast thylakoidal processing peptidase, putative [Arabidopsis
thaliana]
Length = 367
Score = 112 bits (280), Expect = 5e-24
Identities = 45/62 (72%), Positives = 60/62 (96%)
Frame = -3
Query: 682 EDYVLEPLNYELDRMVVPKGHVYVLGDHRNRSFDSHNWGPLPVENILGRSMFRYWPPSRV 503
ED+VLEP++YE++ M VP+G+V+VLGD+RN+SFDSHNWGPLP++NI+GRS+FRYWPPS+V
Sbjct: 290 EDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPSKV 349
Query: 502 SD 497
SD
Sbjct: 350 SD 351
>ref|NP_189102.1| chloroplast thylakoidal processing peptidase, putative; protein id:
At3g24590.1 [Arabidopsis thaliana]
Length = 149
Score = 92.4 bits (228), Expect = 5e-18
Identities = 38/63 (60%), Positives = 52/63 (82%)
Frame = -3
Query: 682 EDYVLEPLNYELDRMVVPKGHVYVLGDHRNRSFDSHNWGPLPVENILGRSMFRYWPPSRV 503
E ++LEP YE+ + VP+ V+V+GD+RN S+DSH WGPLP++NI+GRS+FRYWPP+RV
Sbjct: 76 EKFILEPPGYEMTPIRVPENSVFVMGDNRNNSYDSHVWGPLPLKNIIGRSVFRYWPPNRV 135
Query: 502 SDT 494
S T
Sbjct: 136 SGT 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 619,272,072
Number of Sequences: 1393205
Number of extensions: 14284745
Number of successful extensions: 36516
Number of sequences better than 10.0: 243
Number of HSP's better than 10.0 without gapping: 35126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36466
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
