Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002438A_C01 KMC002438A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P56199|ITA1_HUMAN Integrin alpha-1 (Laminin and collagen rece... 32 4.5
sp|P54960|HMDH_BLAGE 3-hydroxy-3-methylglutaryl-coenzyme A reduc... 32 5.8
pir||S30338 hydroxymethylglutaryl-CoA reductase (NADPH2) (EC 1.1... 32 5.8
gb|AAD45264.1|AF147795_5 putative O-antigen polymerase [Pseudomo... 31 7.6
gb|AAM27574.1|AF498402_7 wzy [Pseudomonas aeruginosa] 31 7.6
>sp|P56199|ITA1_HUMAN Integrin alpha-1 (Laminin and collagen receptor) (VLA-1) (CD49a)
gi|346210|pir||A45226 integrin alpha-1 chain - human
(fragment)
Length = 1151
Score = 32.0 bits (71), Expect = 4.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 88 NYSLSELKEPRENLHQEGKSS-C*QNTVCFRVKLHCKQ 198
N+ +++ ++N H EGK + C TVCF VKL K+
Sbjct: 647 NFEPNKVNIQKKNCHMEGKETVCINATVCFEVKLKSKE 684
>sp|P54960|HMDH_BLAGE 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
gi|1655537|emb|CAA49628.1| hydroxymethylglutaryl-CoA
reductase (NADPH) [Blattella germanica]
Length = 856
Score = 31.6 bits (70), Expect = 5.8
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +1
Query: 190 CKQPQNVTSKKLLCSAY*PNCIAAIICYVIATRKLPTKEALKAGHSAQKHQRFQKYS 360
C V +C N +A I+C + +L AL AGH + H R + S
Sbjct: 785 CLDMLGVRGANEMCPGENANTLARIVCGTVLAGELSLMSALAAGHLVKSHMRHNRSS 841
>pir||S30338 hydroxymethylglutaryl-CoA reductase (NADPH2) (EC 1.1.1.34) - German
cockroach
Length = 856
Score = 31.6 bits (70), Expect = 5.8
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +1
Query: 190 CKQPQNVTSKKLLCSAY*PNCIAAIICYVIATRKLPTKEALKAGHSAQKHQRFQKYS 360
C V +C N +A I+C + +L AL AGH + H R + S
Sbjct: 785 CLDMLGVRGANEICPGENANTLARIVCGTVLAGELSLMSALAAGHLVKSHMRHNRSS 841
>gb|AAD45264.1|AF147795_5 putative O-antigen polymerase [Pseudomonas aeruginosa]
Length = 411
Score = 31.2 bits (69), Expect = 7.6
Identities = 22/72 (30%), Positives = 37/72 (50%)
Frame = -2
Query: 238 MQSREVSLTSHFVVACNAISHENIQYSVSNCFCLLGAGFPLVLSVLIMNNFHEIEITALD 59
M+ R V+L FV + + + +S + L+ AGF + +L +NN+ +I+ +AL
Sbjct: 1 MKQRSVALVLLFVFLFHILRN------LSGAYYLVLAGFCGLFFLLFINNWRDIKYSALG 54
Query: 58 II*GFFLLYLQL 23
I FF Y L
Sbjct: 55 IFVIFFWTYASL 66
>gb|AAM27574.1|AF498402_7 wzy [Pseudomonas aeruginosa]
Length = 411
Score = 31.2 bits (69), Expect = 7.6
Identities = 22/72 (30%), Positives = 37/72 (50%)
Frame = -2
Query: 238 MQSREVSLTSHFVVACNAISHENIQYSVSNCFCLLGAGFPLVLSVLIMNNFHEIEITALD 59
M+ R V+L FV + + + +S + L+ AGF + +L +NN+ +I+ +AL
Sbjct: 1 MKQRSVALVLLFVFLFHILRN------LSGAYYLVLAGFCGLFFLLFINNWRDIKYSALG 54
Query: 58 II*GFFLLYLQL 23
I FF Y L
Sbjct: 55 IFVIFFWTYASL 66
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,805,252
Number of Sequences: 1393205
Number of extensions: 7845562
Number of successful extensions: 21507
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21504
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
