Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002436A_C01 KMC002436A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172805.1| hypothetical protein; protein id: At1g13480.1 [... 114 1e-24
gb|AAG09549.1|AC011810_8 Hypothetical Protein [Arabidopsis thali... 114 1e-24
ref|NP_172807.1| hypothetical protein; protein id: At1g13500.1 [... 106 2e-22
ref|NP_172809.1| hypothetical protein; protein id: At1g13520.1 [... 106 2e-22
pir||C86268 F13B4.2 protein - Arabidopsis thaliana gi|9802751|gb... 106 2e-22
>ref|NP_172805.1| hypothetical protein; protein id: At1g13480.1 [Arabidopsis
thaliana]
Length = 387
Score = 114 bits (284), Expect = 1e-24
Identities = 59/141 (41%), Positives = 86/141 (60%), Gaps = 3/141 (2%)
Frame = -3
Query: 583 WEKVFSKENSGKN--VVFVDVNVQTEVVKVAGKDAVWDENGVVDGVLWYKSFDDAGAETS 410
WE+VF EN G V VDV+V+TE VK+ G++ E+ DGV+W+ D +
Sbjct: 248 WEEVFFCENIGNEHFEVVVDVDVETESVKLEGQETNLREDSG-DGVVWFSVLRDEKDDKK 306
Query: 409 VGLSMEIVEGMKWEQPRVGWVAGNMRQVRVERVEEF-GGTNKWKKLGCYVLVESFVLKRM 233
+GL +VE MKWE+ R GW+ + ++R E F GG++ WK CYVL+ESF L RM
Sbjct: 307 IGLGSVVVERMKWEEERFGWLNEAGERSNIKRSERFEGGSSHWKSYRCYVLIESFELTRM 366
Query: 232 DRRLMLTCDYRHTNPIRGKWE 170
D L+LT ++RH + ++ KW+
Sbjct: 367 DGSLVLTYEFRHVDKLKSKWD 387
>gb|AAG09549.1|AC011810_8 Hypothetical Protein [Arabidopsis thaliana]
Length = 368
Score = 114 bits (284), Expect = 1e-24
Identities = 59/141 (41%), Positives = 86/141 (60%), Gaps = 3/141 (2%)
Frame = -3
Query: 583 WEKVFSKENSGKN--VVFVDVNVQTEVVKVAGKDAVWDENGVVDGVLWYKSFDDAGAETS 410
WE+VF EN G V VDV+V+TE VK+ G++ E+ DGV+W+ D +
Sbjct: 229 WEEVFFCENIGNEHFEVVVDVDVETESVKLEGQETNLREDSG-DGVVWFSVLRDEKDDKK 287
Query: 409 VGLSMEIVEGMKWEQPRVGWVAGNMRQVRVERVEEF-GGTNKWKKLGCYVLVESFVLKRM 233
+GL +VE MKWE+ R GW+ + ++R E F GG++ WK CYVL+ESF L RM
Sbjct: 288 IGLGSVVVERMKWEEERFGWLNEAGERSNIKRSERFEGGSSHWKSYRCYVLIESFELTRM 347
Query: 232 DRRLMLTCDYRHTNPIRGKWE 170
D L+LT ++RH + ++ KW+
Sbjct: 348 DGSLVLTYEFRHVDKLKSKWD 368
>ref|NP_172807.1| hypothetical protein; protein id: At1g13500.1 [Arabidopsis
thaliana]
Length = 386
Score = 106 bits (265), Expect = 2e-22
Identities = 60/144 (41%), Positives = 87/144 (59%), Gaps = 6/144 (4%)
Frame = -3
Query: 583 WEKVFSKENSGKNVVF---VDVNVQTEVVKVAGKDAVWDENGV-VDGVLWYKSFDDAGAE 416
+E+VF EN G N F VDV V+TEVVK+ G+ + GV DGV+W+ +A
Sbjct: 247 FEEVFFCENVGNNKRFEVVVDVEVETEVVKLEGERIARETQGVNSDGVVWF----NASGN 302
Query: 415 TSVGLSMEIVEGMKWEQPRVGWV-AGNMRQVRVERVEEF-GGTNKWKKLGCYVLVESFVL 242
+GL ++E MKWE+ R GW+ G ++ ++R E F GG WK CYVLVE+F L
Sbjct: 303 EKIGLGSVVLERMKWEEERFGWLNKGYEQRSSIKRTERFEGGGPYWKSYRCYVLVETFEL 362
Query: 241 KRMDRRLMLTCDYRHTNPIRGKWE 170
KR D L+LT +++H + ++ KW+
Sbjct: 363 KRTDGSLVLTYEFKHVDKLKSKWD 386
>ref|NP_172809.1| hypothetical protein; protein id: At1g13520.1 [Arabidopsis
thaliana]
Length = 387
Score = 106 bits (265), Expect = 2e-22
Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Frame = -3
Query: 583 WEKVFSKENSGKNV----VFVDVNVQTEVVKVAGKDAVWDENGVVDGVLWYKSFDDAGAE 416
WE+V+S N N V VDV+V+T+VVK+ G++ + E G +W+ D +
Sbjct: 247 WEEVYSCVNVNYNQKGGEVVVDVDVETQVVKLEGQETISRETSG-GGFVWFSVLGDERQD 305
Query: 415 TSVGLSMEIVEGMKWEQPRVGWVAGNMRQVRVERVEEF-GGTNKWKKLGCYVLVESFVLK 239
+GL +VE MKWE+ R GW+ N + ++R E F GG++ WK C VL+ESF LK
Sbjct: 306 KKIGLGSVVVERMKWEEERFGWL-NNGERSNIKRSERFEGGSSHWKSYRCLVLIESFELK 364
Query: 238 RMDRRLMLTCDYRHTNPIRGKWE 170
RMD L+LT ++ H + ++ KW+
Sbjct: 365 RMDGSLVLTYEFTHVDKLKSKWD 387
>pir||C86268 F13B4.2 protein - Arabidopsis thaliana
gi|9802751|gb|AAF99820.1|AC027134_2 Hypothetical protein
[Arabidopsis thaliana]
Length = 702
Score = 106 bits (265), Expect = 2e-22
Identities = 60/144 (41%), Positives = 87/144 (59%), Gaps = 6/144 (4%)
Frame = -3
Query: 583 WEKVFSKENSGKNVVF---VDVNVQTEVVKVAGKDAVWDENGV-VDGVLWYKSFDDAGAE 416
+E+VF EN G N F VDV V+TEVVK+ G+ + GV DGV+W+ +A
Sbjct: 563 FEEVFFCENVGNNKRFEVVVDVEVETEVVKLEGERIARETQGVNSDGVVWF----NASGN 618
Query: 415 TSVGLSMEIVEGMKWEQPRVGWV-AGNMRQVRVERVEEF-GGTNKWKKLGCYVLVESFVL 242
+GL ++E MKWE+ R GW+ G ++ ++R E F GG WK CYVLVE+F L
Sbjct: 619 EKIGLGSVVLERMKWEEERFGWLNKGYEQRSSIKRTERFEGGGPYWKSYRCYVLVETFEL 678
Query: 241 KRMDRRLMLTCDYRHTNPIRGKWE 170
KR D L+LT +++H + ++ KW+
Sbjct: 679 KRTDGSLVLTYEFKHVDKLKSKWD 702
Score = 58.2 bits (139), Expect = 8e-08
Identities = 38/98 (38%), Positives = 54/98 (54%), Gaps = 5/98 (5%)
Frame = -3
Query: 583 WEKVFS--KENSGKNVVFVDVNVQTEVVKVAGKDAVWDENGV-VDGVLWYKSFDDAGAET 413
WE+VFS K+ S V VDV + TEVVKV G++ GV +G +W+ A +
Sbjct: 246 WEEVFSYEKDKSRNYDVLVDVELDTEVVKVDGQEI---SRGVEANGFVWF-----AVGDK 297
Query: 412 SVGLSMEIVEGMKWEQPRVGWV--AGNMRQVRVERVEE 305
+GL +VE MKWE+ R GW N R + +R+E+
Sbjct: 298 KIGLGSVVVERMKWEEERFGWTGKGDNERSMVAKRLEK 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,369,578
Number of Sequences: 1393205
Number of extensions: 12494666
Number of successful extensions: 45845
Number of sequences better than 10.0: 277
Number of HSP's better than 10.0 without gapping: 39264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44491
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
