Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002432A_C01 KMC002432A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO13361.1| putative transporter [Arabidopsis thaliana] 194 4e-49
ref|NP_180219.1| putative membrane transporter; protein id: At2g... 194 4e-49
dbj|BAB61205.1| putative permease 1 [Oryza sativa (japonica cult... 177 9e-44
ref|NP_180966.1| putative membrane transporter; protein id: At2g... 165 4e-40
gb|AAK59632.1| putative membrane transporter protein [Arabidopsi... 165 4e-40
>gb|AAO13361.1| putative transporter [Arabidopsis thaliana]
Length = 551
Score = 194 bits (494), Expect = 4e-49
Identities = 91/144 (63%), Positives = 111/144 (76%), Gaps = 1/144 (0%)
Frame = -1
Query: 533 SIPLSIFAAIYCVLFGIVAAIGISFIQFSYYDSMSNIYIHGLSLFLGISIPLYFIMNISP 354
SIPL IFA +YC+L GIV A+GISFIQF+ +SM N+Y+ G+SLFL +SI YF+ N S
Sbjct: 407 SIPLPIFAGVYCILLGIVVAVGISFIQFTDTNSMRNMYVIGVSLFLSLSIAQYFLANTSR 466
Query: 353 DGRGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLDVKHKEDD-RGLTWWRPFQHR 177
G GPVRT GGWFNDILNTIF+S P VA I+ T+LDNTL+ +H DD RG+ WW+PFQHR
Sbjct: 467 AGYGPVRTAGGWFNDILNTIFASAPLVATILATILDNTLEARHASDDARGIPWWKPFQHR 526
Query: 176 KGDVRNDEFYRFPLGLTEYIPSRF 105
GD RNDEFY PL + E +P+RF
Sbjct: 527 NGDGRNDEFYSMPLRINELMPTRF 550
>ref|NP_180219.1| putative membrane transporter; protein id: At2g26510.1, supported
by cDNA: gi_13877634 [Arabidopsis thaliana]
gi|7488006|pir||T00984 probable membrane transporter
At2g26510 [imported] - Arabidopsis thaliana
gi|2739376|gb|AAC14499.1| putative membrane transporter
[Arabidopsis thaliana]
gi|13877635|gb|AAK43895.1|AF370518_1 putative membrane
transporter [Arabidopsis thaliana]
Length = 551
Score = 194 bits (494), Expect = 4e-49
Identities = 91/144 (63%), Positives = 111/144 (76%), Gaps = 1/144 (0%)
Frame = -1
Query: 533 SIPLSIFAAIYCVLFGIVAAIGISFIQFSYYDSMSNIYIHGLSLFLGISIPLYFIMNISP 354
SIPL IFA +YC+L GIV A+GISFIQF+ +SM N+Y+ G+SLFL +SI YF+ N S
Sbjct: 407 SIPLPIFAGVYCILLGIVVAVGISFIQFTDTNSMRNMYVIGVSLFLSLSIAQYFLANTSR 466
Query: 353 DGRGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLDVKHKEDD-RGLTWWRPFQHR 177
G GPVRT GGWFNDILNTIF+S P VA I+ T+LDNTL+ +H DD RG+ WW+PFQHR
Sbjct: 467 AGYGPVRTAGGWFNDILNTIFASAPLVATILATILDNTLEARHASDDARGIPWWKPFQHR 526
Query: 176 KGDVRNDEFYRFPLGLTEYIPSRF 105
GD RNDEFY PL + E +P+RF
Sbjct: 527 NGDGRNDEFYSMPLRINELMPTRF 550
>dbj|BAB61205.1| putative permease 1 [Oryza sativa (japonica cultivar-group)]
gi|20804662|dbj|BAB92350.1| putative permease 1 [Oryza
sativa (japonica cultivar-group)]
Length = 524
Score = 177 bits (448), Expect = 9e-44
Identities = 79/140 (56%), Positives = 102/140 (72%)
Frame = -1
Query: 533 SIPLSIFAAIYCVLFGIVAAIGISFIQFSYYDSMSNIYIHGLSLFLGISIPLYFIMNISP 354
SIP +IFAA+YCVLFG+VAA+G+SF+QF+ +SM N++I G+S+FLG+S+P YF
Sbjct: 383 SIPFTIFAAVYCVLFGLVAAVGLSFLQFTNMNSMRNLFIVGVSIFLGLSVPEYFFRYSMA 442
Query: 353 DGRGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLDVKHKEDDRGLTWWRPFQHRK 174
RGP T GWFND +NTIFSSPPTV +IV LDNTL+VK+ DRG+ WW PF+ K
Sbjct: 443 AQRGPAHTKAGWFNDYINTIFSSPPTVGLIVAVFLDNTLEVKNAAKDRGMPWWVPFRSFK 502
Query: 173 GDVRNDEFYRFPLGLTEYIP 114
GD R++EFY P L + P
Sbjct: 503 GDARSEEFYSLPFNLNRFFP 522
>ref|NP_180966.1| putative membrane transporter; protein id: At2g34190.1, supported
by cDNA: gi_14334907 [Arabidopsis thaliana]
gi|7488005|pir||T02307 probable membrane transporter
At2g34190 [imported] - Arabidopsis thaliana
gi|3337350|gb|AAC27395.1| putative membrane transporter
[Arabidopsis thaliana] gi|23297127|gb|AAN13099.1|
putative membrane transporter [Arabidopsis thaliana]
Length = 524
Score = 165 bits (417), Expect = 4e-40
Identities = 78/140 (55%), Positives = 97/140 (68%)
Frame = -1
Query: 533 SIPLSIFAAIYCVLFGIVAAIGISFIQFSYYDSMSNIYIHGLSLFLGISIPLYFIMNISP 354
SIP +IFAA+YCVLFG+VA++G+SF+QF+ +S+ N++I G+SLFLG+SIP YF
Sbjct: 383 SIPFTIFAAVYCVLFGLVASVGLSFLQFTNMNSLRNLFIVGVSLFLGLSIPEYFRDFSMK 442
Query: 353 DGRGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLDVKHKEDDRGLTWWRPFQHRK 174
GP TN GWFND LNTIF S P VA++V LDNTLD K DRGL WW F+ K
Sbjct: 443 ALHGPAHTNAGWFNDFLNTIFLSSPMVALMVAVFLDNTLDYKETARDRGLPWWAKFRTFK 502
Query: 173 GDVRNDEFYRFPLGLTEYIP 114
GD RN+EFY P L + P
Sbjct: 503 GDSRNEEFYTLPFNLNRFFP 522
>gb|AAK59632.1| putative membrane transporter protein [Arabidopsis thaliana]
Length = 524
Score = 165 bits (417), Expect = 4e-40
Identities = 78/140 (55%), Positives = 97/140 (68%)
Frame = -1
Query: 533 SIPLSIFAAIYCVLFGIVAAIGISFIQFSYYDSMSNIYIHGLSLFLGISIPLYFIMNISP 354
SIP +IFAA+YCVLFG+VA++G+SF+QF+ +S+ N++I G+SLFLG+SIP YF
Sbjct: 383 SIPFTIFAAVYCVLFGLVASVGLSFLQFTNMNSLRNLFIVGVSLFLGLSIPEYFRDFSMK 442
Query: 353 DGRGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLDVKHKEDDRGLTWWRPFQHRK 174
GP TN GWFND LNTIF S P VA++V LDNTLD K DRGL WW F+ K
Sbjct: 443 ALHGPAHTNAGWFNDFLNTIFLSSPMVALMVAVFLDNTLDYKETARDRGLPWWAKFRTFK 502
Query: 173 GDVRNDEFYRFPLGLTEYIP 114
GD RN+EFY P L + P
Sbjct: 503 GDSRNEEFYTLPFNLNRFFP 522
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,742,955
Number of Sequences: 1393205
Number of extensions: 11094427
Number of successful extensions: 27164
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 26492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27114
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
