Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002431A_C01 KMC002431A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF97830.1|AC034107_13 Contains strong similarity to high-pI ... 95 2e-27
pir||E86316 protein T10O22.11 [imported] - Arabidopsis thaliana ... 95 2e-27
ref|NP_173252.1| laccase (diphenol oxidase) family; protein id: ... 95 2e-27
dbj|BAB90733.1| putative laccase [Oryza sativa (japonica cultiva... 95 4e-27
gb|AAK37830.1|AF132126_1 laccase [Pinus taeda] 97 7e-27
>gb|AAF97830.1|AC034107_13 Contains strong similarity to high-pI laccase (LAC2-3) from
Liriodendron tulipifera gb|U73105 and contains two
Multicopper oxidase PF|00394 domains. ESTs gb|T22735,
gb|AA585817, gb|AI994215 come from this gene.
[Arabidopsis thaliana]
Length = 581
Score = 94.7 bits (234), Expect(2) = 2e-27
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = -2
Query: 456 GWGFGNFD*EKDPLGYNLVDPPYQNTVAIPKNGWTTIRFRAKNPGVWFMHCHIERHVTLG 277
G GFGNFD EKDP YNLVDPP +NT A+P GW IR A NPGVWF+HCH+E+H + G
Sbjct: 495 GRGFGNFDPEKDPKRYNLVDPPERNTFAVPTGGWAAIRINADNPGVWFIHCHLEQHTSWG 554
Query: 276 NGYDF 262
F
Sbjct: 555 LAMGF 559
Score = 48.5 bits (114), Expect(2) = 2e-27
Identities = 19/29 (65%), Positives = 23/29 (78%)
Frame = -3
Query: 281 WGMAMTFIVKDGNKPEEKMLPPPLDMPQC 195
WG+AM FIVKDG P + +LPPP D+PQC
Sbjct: 553 WGLAMGFIVKDGPLPSQTLLPPPHDLPQC 581
>pir||E86316 protein T10O22.11 [imported] - Arabidopsis thaliana
gi|8671783|gb|AAF78389.1|AC069551_22 T10O22.11
[Arabidopsis thaliana]
Length = 576
Score = 94.7 bits (234), Expect(2) = 2e-27
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = -2
Query: 456 GWGFGNFD*EKDPLGYNLVDPPYQNTVAIPKNGWTTIRFRAKNPGVWFMHCHIERHVTLG 277
G GFGNFD EKDP YNLVDPP +NT A+P GW IR A NPGVWF+HCH+E+H + G
Sbjct: 490 GRGFGNFDPEKDPKRYNLVDPPERNTFAVPTGGWAAIRINADNPGVWFIHCHLEQHTSWG 549
Query: 276 NGYDF 262
F
Sbjct: 550 LAMGF 554
Score = 48.5 bits (114), Expect(2) = 2e-27
Identities = 19/29 (65%), Positives = 23/29 (78%)
Frame = -3
Query: 281 WGMAMTFIVKDGNKPEEKMLPPPLDMPQC 195
WG+AM FIVKDG P + +LPPP D+PQC
Sbjct: 548 WGLAMGFIVKDGPLPSQTLLPPPHDLPQC 576
>ref|NP_173252.1| laccase (diphenol oxidase) family; protein id: At1g18140.1
[Arabidopsis thaliana]
Length = 526
Score = 94.7 bits (234), Expect(2) = 2e-27
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = -2
Query: 456 GWGFGNFD*EKDPLGYNLVDPPYQNTVAIPKNGWTTIRFRAKNPGVWFMHCHIERHVTLG 277
G GFGNFD EKDP YNLVDPP +NT A+P GW IR A NPGVWF+HCH+E+H + G
Sbjct: 440 GRGFGNFDPEKDPKRYNLVDPPERNTFAVPTGGWAAIRINADNPGVWFIHCHLEQHTSWG 499
Query: 276 NGYDF 262
F
Sbjct: 500 LAMGF 504
Score = 48.5 bits (114), Expect(2) = 2e-27
Identities = 19/29 (65%), Positives = 23/29 (78%)
Frame = -3
Query: 281 WGMAMTFIVKDGNKPEEKMLPPPLDMPQC 195
WG+AM FIVKDG P + +LPPP D+PQC
Sbjct: 498 WGLAMGFIVKDGPLPSQTLLPPPHDLPQC 526
>dbj|BAB90733.1| putative laccase [Oryza sativa (japonica cultivar-group)]
Length = 562
Score = 95.1 bits (235), Expect(2) = 4e-27
Identities = 40/60 (66%), Positives = 45/60 (74%)
Frame = -2
Query: 456 GWGFGNFD*EKDPLGYNLVDPPYQNTVAIPKNGWTTIRFRAKNPGVWFMHCHIERHVTLG 277
G G GNFD KDP YNLVDPP +NTV +P GWT IRFRA NPGVWF+HCH+E H + G
Sbjct: 476 GRGVGNFDPAKDPAKYNLVDPPERNTVGVPAGGWTAIRFRADNPGVWFLHCHLEVHTSWG 535
Score = 47.0 bits (110), Expect(2) = 4e-27
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = -3
Query: 281 WGMAMTFIVKDGNKPEEKMLPPPLDMPQC 195
WG+ M F+V+DG+ P+E +LPPP D+P+C
Sbjct: 534 WGLKMAFLVEDGSGPDESVLPPPKDLPKC 562
>gb|AAK37830.1|AF132126_1 laccase [Pinus taeda]
Length = 577
Score = 96.7 bits (239), Expect(2) = 7e-27
Identities = 40/60 (66%), Positives = 45/60 (74%)
Frame = -2
Query: 456 GWGFGNFD*EKDPLGYNLVDPPYQNTVAIPKNGWTTIRFRAKNPGVWFMHCHIERHVTLG 277
G GFGN+D DP +NLVDPP +NTV +P GWT IRFRA NPGVWFMHCH+E H T G
Sbjct: 491 GRGFGNYDPNTDPASFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWG 550
Score = 44.7 bits (104), Expect(2) = 7e-27
Identities = 15/29 (51%), Positives = 23/29 (78%)
Frame = -3
Query: 281 WGMAMTFIVKDGNKPEEKMLPPPLDMPQC 195
WG+ M F+V++G+ P++ MLPPP D P+C
Sbjct: 549 WGLKMAFLVENGDGPDQSMLPPPSDFPKC 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,649,592
Number of Sequences: 1393205
Number of extensions: 8613605
Number of successful extensions: 16734
Number of sequences better than 10.0: 314
Number of HSP's better than 10.0 without gapping: 16299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16727
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
