Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002430A_C01 KMC002430A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_220319.1| General Stress Protein [Chlamydia trachomatis] ... 33 1.8
ref|NP_296561.1| general stress protein Ctc [Chlamydia muridarum... 33 1.8
ref|NP_301006.1| general stress protein [Chlamydophila pneumonia... 32 3.0
ref|NP_225144.1| General Stress Protein [Chlamydophila pneumonia... 32 3.0
ref|NP_390872.1| ytlR [Bacillus subtilis] gi|7475403|pir||H69995... 32 3.9
>ref|NP_220319.1| General Stress Protein [Chlamydia trachomatis]
gi|7674229|sp|O84805|RL25_CHLTR Probable 50S ribosomal
protein L25 gi|7468924|pir||E71469 probable general
stress protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) gi|3329265|gb|AAC68394.1| General Stress
Protein [Chlamydia trachomatis]
Length = 185
Score = 33.1 bits (74), Expect = 1.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 348 RCQSRVGLVASKLGSFMRSQVRILRNTCVERDIQLFLEI 464
RC + V V KLG +R +R +R C +DI FLE+
Sbjct: 109 RCINTVDCVGVKLGGSLRQVIRCIRVVCKPKDIVPFLEL 147
>ref|NP_296561.1| general stress protein Ctc [Chlamydia muridarum]
gi|13633862|sp|Q9PLC2|RL25_CHLMU Probable 50S ribosomal
protein L25 gi|11281844|pir||B81732 general stress
protein Ctc TC0182 [imported] - Chlamydia muridarum
(strain Nigg) gi|7190219|gb|AAF39056.1| general stress
protein Ctc [Chlamydia muridarum]
Length = 185
Score = 33.1 bits (74), Expect = 1.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 348 RCQSRVGLVASKLGSFMRSQVRILRNTCVERDIQLFLEI 464
RC + V V KLG +R +R +R C +DI FLE+
Sbjct: 109 RCINTVDCVGVKLGGSLRQVIRYMRVVCKPKDIVPFLEL 147
>ref|NP_301006.1| general stress protein [Chlamydophila pneumoniae J138]
gi|16752081|ref|NP_445447.1| general stress protein Ctc
[Chlamydophila pneumoniae AR39]
gi|12644491|sp|Q9Z6V7|RL25_CHLPN Probable 50S ribosomal
protein L25 gi|11281845|pir||H81523 general stress
protein Ctc CP0910 [imported] - Chlamydophila pneumoniae
(strain AR39) gi|25348968|pir||C86609 general stress
protein [imported] - Chlamydophila pneumoniae (strain
J138) gi|7189823|gb|AAF38695.1| general stress protein
Ctc [Chlamydophila pneumoniae AR39]
gi|8979323|dbj|BAA99157.1| general stress protein
[Chlamydophila pneumoniae J138]
Length = 185
Score = 32.3 bits (72), Expect = 3.0
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +3
Query: 348 RCQSRVGLVASKLGSFMRSQVRILRNTCVERDIQLFLEI 464
RC + V + KLG +R +R +R C +DI FLE+
Sbjct: 109 RCINAVDCIGVKLGGSLRQVIRAVRVVCKPKDIVPFLEL 147
>ref|NP_225144.1| General Stress Protein [Chlamydophila pneumoniae CWL029]
gi|7468241|pir||D72014 general stress protein -
Chlamydophila pneumoniae (strain CWL029)
gi|4377274|gb|AAD19087.1| General Stress Protein
[Chlamydophila pneumoniae CWL029]
Length = 185
Score = 32.3 bits (72), Expect = 3.0
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +3
Query: 348 RCQSRVGLVASKLGSFMRSQVRILRNTCVERDIQLFLEI 464
RC + V + KLG +R +R +R C +DI FLE+
Sbjct: 109 RCINAVDCIGVKLGGSLRQVIRAVRVVCKPKDIVPFLEL 147
>ref|NP_390872.1| ytlR [Bacillus subtilis] gi|7475403|pir||H69995 hypothetical
protein ytlR - Bacillus subtilis
gi|2293204|gb|AAC00282.1| YtlR [Bacillus subtilis]
gi|2635478|emb|CAB14972.1| ytlR [Bacillus subtilis
subsp. subtilis str. 168]
Length = 309
Score = 32.0 bits (71), Expect = 3.9
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -3
Query: 280 LFKWLMSFLVKKKTEHSSEWTDYCGHSSVICFQISQQSDF 161
++K + L+K+K EH S T++ GH+ V+ QIS ++
Sbjct: 20 VWKSIQKELIKRKVEHRSFLTEHPGHAEVLARQISTIQEY 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,934,822
Number of Sequences: 1393205
Number of extensions: 8377644
Number of successful extensions: 16410
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16408
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
