Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002428A_C01 KMC002428A_c01
(704 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177032.1| transmembrane protein, putative; protein id: At... 161 9e-39
gb|AAM65603.1| transmembrane protein, putative [Arabidopsis thal... 159 4e-38
ref|NP_173923.1| transmembrane protein, putative; protein id: At... 159 4e-38
ref|NP_568535.1| transmembrane protein FT27/PFT27-like; protein ... 99 7e-20
gb|AAD30566.2|AF146793_3 TPARDL [Mus musculus] 98 1e-19
>ref|NP_177032.1| transmembrane protein, putative; protein id: At1g68650.1
[Arabidopsis thaliana] gi|25353311|pir||A96711
hypothetical protein F24J5.11 [imported] - Arabidopsis
thaliana gi|5734713|gb|AAD49978.1|AC008075_11 Is a
member of PF|01169 Uncharacterized (transmembrane
domain) protein family. [Arabidopsis thaliana]
gi|26452502|dbj|BAC43336.1| putative transmembrane
protein [Arabidopsis thaliana]
Length = 228
Score = 161 bits (407), Expect = 9e-39
Identities = 78/91 (85%), Positives = 88/91 (95%)
Frame = -3
Query: 702 FFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILAQTLCTTAAVMGGKSL 523
FFSPIFL+AFSI FFGEWGDKSQLATIGLAADENP GVVLGGI+AQTLCTTAAV+GGKSL
Sbjct: 138 FFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIVAQTLCTTAAVLGGKSL 197
Query: 522 ASQISEKVVALSGGVLFIVFGIQSFLSPVES 430
ASQISE++VALSGG+LFI+FGIQS L+PV++
Sbjct: 198 ASQISERIVALSGGMLFIIFGIQSLLTPVDA 228
>gb|AAM65603.1| transmembrane protein, putative [Arabidopsis thaliana]
Length = 230
Score = 159 bits (402), Expect = 4e-38
Identities = 77/91 (84%), Positives = 88/91 (96%)
Frame = -3
Query: 702 FFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILAQTLCTTAAVMGGKSL 523
FFSPIFL+AFSI FFGEWGDKSQLATIGLAADENPFGVVLGG++AQ LCTTAAV+GGKSL
Sbjct: 140 FFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGGVVAQFLCTTAAVIGGKSL 199
Query: 522 ASQISEKVVALSGGVLFIVFGIQSFLSPVES 430
ASQISE++VALSGG+LFI+FGIQS+L+ VE+
Sbjct: 200 ASQISERIVALSGGMLFIIFGIQSYLTSVEA 230
>ref|NP_173923.1| transmembrane protein, putative; protein id: At1g25520.1, supported
by cDNA: 40780. [Arabidopsis thaliana]
gi|25353313|pir||E86385 probable transmembrane protein
[imported] - Arabidopsis thaliana
gi|12321501|gb|AAG50804.1|AC079281_6 transmembrane
protein, putative [Arabidopsis thaliana]
gi|27754432|gb|AAO22664.1| putative transmembrane
protein [Arabidopsis thaliana]
gi|28394045|gb|AAO42430.1| putative transmembrane
protein [Arabidopsis thaliana]
Length = 230
Score = 159 bits (402), Expect = 4e-38
Identities = 77/91 (84%), Positives = 88/91 (96%)
Frame = -3
Query: 702 FFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILAQTLCTTAAVMGGKSL 523
FFSPIFL+AFSI FFGEWGDKSQLATIGLAADENPFGVVLGG++AQ LCTTAAV+GGKSL
Sbjct: 140 FFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGGVVAQFLCTTAAVIGGKSL 199
Query: 522 ASQISEKVVALSGGVLFIVFGIQSFLSPVES 430
ASQISE++VALSGG+LFI+FGIQS+L+ VE+
Sbjct: 200 ASQISERIVALSGGMLFIIFGIQSYLTSVEA 230
>ref|NP_568535.1| transmembrane protein FT27/PFT27-like; protein id: At5g36290.1,
supported by cDNA: 12993., supported by cDNA:
gi_15450793 [Arabidopsis thaliana]
gi|15450794|gb|AAK96668.1| transmembrane protein
FT27/PFT27-like [Arabidopsis thaliana]
gi|21537321|gb|AAM61662.1| transmembrane protein
FT27/PFT27-like [Arabidopsis thaliana]
Length = 293
Score = 98.6 bits (244), Expect = 7e-20
Identities = 44/88 (50%), Positives = 63/88 (71%)
Frame = -3
Query: 702 FFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILAQTLCTTAAVMGGKSL 523
F +PIFL++F +TF EWGD+SQ+ATI LA +N GV +G + T+CT+ AV+GG L
Sbjct: 204 FCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSML 263
Query: 522 ASQISEKVVALSGGVLFIVFGIQSFLSP 439
AS+IS++ VA GG+LF+ F + S+ P
Sbjct: 264 ASRISQRTVATVGGLLFLGFSVSSYFYP 291
>gb|AAD30566.2|AF146793_3 TPARDL [Mus musculus]
Length = 323
Score = 97.8 bits (242), Expect = 1e-19
Identities = 45/89 (50%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Frame = -3
Query: 702 FFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILAQTLCTTAAVMGGKSL 523
F SPIF+QA ++TF EWGD+SQL TI LAA E+P+GV +GG + LCT AV+GG+ +
Sbjct: 231 FISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMI 290
Query: 522 ASQISEKVVALSGGVLFIVFGIQS-FLSP 439
A +IS + V + GG++F+ F + F+SP
Sbjct: 291 AQKISVRTVTIIGGIVFLAFAFSALFISP 319
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,201,767
Number of Sequences: 1393205
Number of extensions: 14683108
Number of successful extensions: 33575
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 32439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33552
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
