Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002427A_C01 KMC002427A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T45806 hypothetical protein F28O9.130 - Arabidopsis thalian... 48 4e-05
ref|NP_567046.1| expressed protein; protein id: At3g57280.1, sup... 48 4e-05
ref|NP_614220.1| Uncharacterized protein specific for M.kandleri... 33 1.9
ref|NP_570571.1| putative EEV host-range protein; CMLV181 [Camel... 33 1.9
ref|NP_502007.1| Putative endoplasmic reticulum membrane protein... 32 2.5
>pir||T45806 hypothetical protein F28O9.130 - Arabidopsis thaliana
gi|6735307|emb|CAB68134.1| hypothetical protein
[Arabidopsis thaliana]
Length = 239
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (85%)
Frame = -3
Query: 460 LSSAMHCFYLYVLISGGNSPPKKLKPSAS 374
+S+ M CFY YV++SGGN PPKKLKPSA+
Sbjct: 207 ISACMLCFYSYVVLSGGNPPPKKLKPSAT 235
>ref|NP_567046.1| expressed protein; protein id: At3g57280.1, supported by cDNA:
14487., supported by cDNA: gi_14517380, supported by
cDNA: gi_15450538 [Arabidopsis thaliana]
gi|14517381|gb|AAK62581.1| AT3g57280/F28O9_130
[Arabidopsis thaliana] gi|15450539|gb|AAK96447.1|
AT3g57280/F28O9_130 [Arabidopsis thaliana]
gi|21553454|gb|AAM62547.1| unknown [Arabidopsis
thaliana]
Length = 226
Score = 48.1 bits (113), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (85%)
Frame = -3
Query: 460 LSSAMHCFYLYVLISGGNSPPKKLKPSAS 374
+S+ M CFY YV++SGGN PPKKLKPSA+
Sbjct: 194 ISACMLCFYSYVVLSGGNPPPKKLKPSAT 222
>ref|NP_614220.1| Uncharacterized protein specific for M.kandleri, MK-21 family
[Methanopyrus kandleri AV19] gi|19887441|gb|AAM02150.1|
Uncharacterized protein specific for M.kandleri, MK-21
family [Methanopyrus kandleri AV19]
Length = 423
Score = 32.7 bits (73), Expect = 1.9
Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 3/56 (5%)
Frame = -2
Query: 467 LYLEFCNALL---LFICSYLWRKLPT*EIEAICQRRMMR*SRSCWPIECGRCNFIY 309
LY F +ALL LF SY+W QRR R R W E G C++++
Sbjct: 264 LYAHFLSALLNVPLFDFSYMW----------FLQRRTKRSKRKLWKDEKGECHYVF 309
>ref|NP_570571.1| putative EEV host-range protein; CMLV181 [Camelpox virus]
gi|18483091|gb|AAL73888.1|AF438165_178 putative EEV
host-range protein; CMLV181 [Camelpox virus M-96]
gi|19718158|gb|AAG37683.1| CMP178R [Camelpox virus CMS]
Length = 317
Score = 32.7 bits (73), Expect = 1.9
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 39 SMNVTTHVILVRNTTLKYMCLQSAVVSKLCSCNKQMNFPIKFH 167
S+ VT H+I+V T + + L S +V +CSCNK N KFH
Sbjct: 273 SLEVTYHIIIVALTIMGVIFLISVIVL-VCSCNKNNN-QYKFH 313
>ref|NP_502007.1| Putative endoplasmic reticulum membrane protein family member, with
at least 3 transmembrane domains, of bilaterial origin
[Caenorhabditis elegans] gi|6137298|sp|Q21973|YXAK_CAEEL
Hypothetical protein R13.3 in chromosome IV
gi|7506695|pir||T24210 hypothetical protein R13.3 -
Caenorhabditis elegans
Length = 513
Score = 32.3 bits (72), Expect = 2.5
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +3
Query: 66 LVRNTTLKYMCLQSAVVSKLCSCNKQMNFPIKFHIASIKS-NKCLGII*CENHIGTTLMT 242
++R ++YM L +V + CS + FP I S S ++CLG E + T L+
Sbjct: 125 MIRRNVIRYMVLAQVLVFRDCSIQVRKRFPTMESIVSAGSFSQCLGSSATEYYWSTGLLV 184
Query: 243 *IHQSGMANCKLTYNLI*IH----RKVYKITSSTFYRP 344
G L N I H RK+ + S+ + P
Sbjct: 185 DARAEGKIAADLLMNEIGKHIIEFRKMLALLSNYDWVP 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,335,441
Number of Sequences: 1393205
Number of extensions: 7608466
Number of successful extensions: 12932
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12923
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
