Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002426A_C01 KMC002426A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32701.1| SOF1 protein-like protein [Arabidopsis thaliana] 80 1e-14
gb|AAK50083.1|AF372943_1 AT4g28450/F20O9_130 [Arabidopsis thalia... 80 1e-14
ref|NP_567810.1| G-protein beta family; protein id: At4g28450.1,... 80 1e-14
pir||T04615 SOF1 protein homolog F20O9.130 - Arabidopsis thalian... 80 1e-14
dbj|BAB17207.1| putative DKFZP564O0463 protein [Oryza sativa (ja... 75 6e-13
>gb|AAL32701.1| SOF1 protein-like protein [Arabidopsis thaliana]
Length = 452
Score = 80.1 bits (196), Expect = 1e-14
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -2
Query: 512 RHRHLPKPVYQAAAEARIRADSKRRKEPRRKAHSAPGSVTTQPLRKKRIISEVE 351
RHRHLPKP+Y+A R DSKRRKE RRKAHSAPG+V T PLRK++II EVE
Sbjct: 399 RHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 452
>gb|AAK50083.1|AF372943_1 AT4g28450/F20O9_130 [Arabidopsis thaliana]
gi|15010646|gb|AAK73982.1| AT4g28450/F20O9_130
[Arabidopsis thaliana] gi|23505961|gb|AAN28840.1|
At4g28450/F20O9_130 [Arabidopsis thaliana]
Length = 452
Score = 80.1 bits (196), Expect = 1e-14
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -2
Query: 512 RHRHLPKPVYQAAAEARIRADSKRRKEPRRKAHSAPGSVTTQPLRKKRIISEVE 351
RHRHLPKP+Y+A R DSKRRKE RRKAHSAPG+V T PLRK++II EVE
Sbjct: 399 RHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 452
>ref|NP_567810.1| G-protein beta family; protein id: At4g28450.1, supported by cDNA:
gi_15010645, supported by cDNA: gi_17065093 [Arabidopsis
thaliana]
Length = 418
Score = 80.1 bits (196), Expect = 1e-14
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -2
Query: 512 RHRHLPKPVYQAAAEARIRADSKRRKEPRRKAHSAPGSVTTQPLRKKRIISEVE 351
RHRHLPKP+Y+A R DSKRRKE RRKAHSAPG+V T PLRK++II EVE
Sbjct: 365 RHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 418
>pir||T04615 SOF1 protein homolog F20O9.130 - Arabidopsis thaliana
gi|2842487|emb|CAA16884.1| SOF1 protein-like protein
[Arabidopsis thaliana] gi|7269699|emb|CAB79647.1| SOF1
protein-like protein [Arabidopsis thaliana]
Length = 283
Score = 80.1 bits (196), Expect = 1e-14
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -2
Query: 512 RHRHLPKPVYQAAAEARIRADSKRRKEPRRKAHSAPGSVTTQPLRKKRIISEVE 351
RHRHLPKP+Y+A R DSKRRKE RRKAHSAPG+V T PLRK++II EVE
Sbjct: 230 RHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 283
>dbj|BAB17207.1| putative DKFZP564O0463 protein [Oryza sativa (japonica
cultivar-group)]
Length = 452
Score = 74.7 bits (182), Expect = 6e-13
Identities = 34/54 (62%), Positives = 42/54 (76%)
Frame = -2
Query: 512 RHRHLPKPVYQAAAEARIRADSKRRKEPRRKAHSAPGSVTTQPLRKKRIISEVE 351
RHRHLPKP+Y+AA R +++ RKE RR+AHSAPGS+ QP RK+RII EVE
Sbjct: 399 RHRHLPKPIYKAANLRRTMIEAENRKEERRRAHSAPGSMPVQPFRKRRIIKEVE 452
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,156,921
Number of Sequences: 1393205
Number of extensions: 8211427
Number of successful extensions: 20378
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20373
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
