Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002425A_C01 KMC002425A_c01
(443 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B86215 protein T6D22.10 [imported] - Arabidopsis thaliana g... 99 2e-20
dbj|BAC21285.1| contains EST AU173909(S20694)~similar to Arabido... 75 2e-13
gb|AAL05593.1| heparan sulfate 6-O-sulfotransferase 1 [Cricetulu... 42 0.002
ref|NP_056633.1| heparan sulfate 6-O-sulfotransferase 1 [Mus mus... 42 0.002
ref|XP_237060.1| similar to heparan sulfate 6-O-sulfotransferase... 42 0.002
>pir||B86215 protein T6D22.10 [imported] - Arabidopsis thaliana
gi|8778843|gb|AAF79842.1|AC026875_22 T6D22.10
[Arabidopsis thaliana]
Length = 603
Score = 98.6 bits (244), Expect = 2e-20
Identities = 52/120 (43%), Positives = 83/120 (68%), Gaps = 11/120 (9%)
Frame = -1
Query: 443 AQSGRRITSLKRISPVNFSKEARLQVPEEVLQEIRSLNDLDLELYEYARVIFYKQHK--T 270
+Q RR+ SLKRI+P NF++ R +VP+EV+Q+I+SLN+LD+ELY+YA+VIF K+H+ +
Sbjct: 460 SQGTRRVNSLKRITPANFTRGTRTRVPKEVIQQIKSLNNLDVELYKYAKVIFAKEHELVS 519
Query: 269 SLLITEDRRD--NISSSAYDII-------LWKDLTIAISFVFILLFFLVIANVRRRTSKV 117
+ LI+ +R ++ S ++ LWK + +A+ + I+LFFL + RRRTSK+
Sbjct: 520 NKLISSSKRSIVDLPSELKSVLGEMGEEKLWKFVPVALMLLLIVLFFLFVNAKRRRTSKI 579
>dbj|BAC21285.1| contains EST AU173909(S20694)~similar to Arabidopsis thaliana
chromosome 1,T6D22.10~unknown protien [Oryza sativa
(japonica cultivar-group)]
Length = 576
Score = 74.7 bits (182), Expect = 2e-13
Identities = 43/121 (35%), Positives = 69/121 (56%), Gaps = 11/121 (9%)
Frame = -1
Query: 443 AQSGRRITSLKRISPVNFSKEARLQVPEEVLQEIRSLNDLDLELYEYARVIFYKQH---- 276
+QS RR SL+++ NFSKEAR QVPE VL++I SLN LD+ELYE+A+ IF ++H
Sbjct: 391 SQSNRRKISLRKVEGANFSKEARWQVPEAVLEQIISLNSLDMELYEHAKKIFTQEHLMLK 450
Query: 275 --KTSLLITEDRRD-----NISSSAYDIILWKDLTIAISFVFILLFFLVIANVRRRTSKV 117
+++++ + D + S++ WK + + + ++ RRRT K+
Sbjct: 451 IQQSTVIQHKQLTDQKGWIEMVCSSWSCSPWKVVLFGLGVTITIALIILALTTRRRTFKL 510
Query: 116 K 114
K
Sbjct: 511 K 511
>gb|AAL05593.1| heparan sulfate 6-O-sulfotransferase 1 [Cricetulus longicaudatus]
Length = 401
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = -1
Query: 428 RITSLKRISPV---NFSKEARLQVPEEVLQEIRSLNDLDLELYEYARVIFYK--QHKTSL 264
R +LK I P N ++ ++V E+ ++ I LNDLD++LY+YA+ +F + Q+K L
Sbjct: 296 RTFNLKFIRPFMQYNSTRAGGVEVDEDTIRHIEELNDLDMQLYDYAKDLFQQRYQYKRQL 355
Query: 263 LITEDRRDN 237
E R N
Sbjct: 356 ERREQRLRN 364
>ref|NP_056633.1| heparan sulfate 6-O-sulfotransferase 1 [Mus musculus]
gi|6683560|dbj|BAA89248.1| heparan sulfate
6-sulfotransferase 1 [Mus musculus]
Length = 401
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = -1
Query: 428 RITSLKRISPV---NFSKEARLQVPEEVLQEIRSLNDLDLELYEYARVIFYK--QHKTSL 264
R +LK I P N ++ ++V E+ ++ I LNDLD++LY+YA+ +F + Q+K L
Sbjct: 296 RTFNLKFIRPFMQYNSTRAGGVEVDEDTIRHIEELNDLDMQLYDYAKDLFQQRYQYKRQL 355
Query: 263 LITEDRRDN 237
E R N
Sbjct: 356 ERREQRLRN 364
>ref|XP_237060.1| similar to heparan sulfate 6-O-sulfotransferase 1 [Cricetulus
longicaudatus] [Rattus norvegicus]
Length = 542
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = -1
Query: 428 RITSLKRISPV---NFSKEARLQVPEEVLQEIRSLNDLDLELYEYARVIFYK--QHKTSL 264
R +LK I P N ++ ++V E+ ++ I LNDLD++LY+YA+ +F + Q+K L
Sbjct: 437 RTFNLKFIRPFMQYNSTRAGGVEVDEDTIRHIEELNDLDMQLYDYAKDLFQQRYQYKRQL 496
Query: 263 LITEDRRDN 237
E R N
Sbjct: 497 ERREQRLRN 505
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,469,371
Number of Sequences: 1393205
Number of extensions: 6285377
Number of successful extensions: 15257
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 14919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15253
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
