Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002423A_C01 KMC002423A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC09490.1| putative nucleotide-binding protein [Oryza sativ... 137 1e-31
emb|CAD41397.1| OJ000223_09.9 [Oryza sativa (japonica cultivar-g... 137 1e-31
ref|NP_568748.1| nucleotide-binding protein; protein id: At5g509... 122 2e-27
gb|AAK26019.1|AF360309_1 putative nucleotide-binding protein [Ar... 122 2e-27
gb|AAN86569.1| nucleotide binding protein [Cypripedium parviflor... 118 3e-26
>emb|CAC09490.1| putative nucleotide-binding protein [Oryza sativa (indica
cultivar-group)]
Length = 262
Score = 137 bits (344), Expect = 1e-31
Identities = 62/84 (73%), Positives = 76/84 (89%)
Frame = -3
Query: 514 WTLEYMREKAPELLNLIACTEVFDSSGGGAVKMCKEMEVPFLGKVPLDPKLCKAAEEGRS 335
W L Y++EKAPELL+++AC+EVFDSS GGA KMC+EMEVPFLGKVP+DP+LCKAAEEGRS
Sbjct: 178 WALNYIKEKAPELLSVVACSEVFDSSKGGAEKMCQEMEVPFLGKVPMDPQLCKAAEEGRS 237
Query: 334 CFGDKDCFVSAPALKNIIEKLLET 263
CF D+ C SAPALK+II+KL++T
Sbjct: 238 CFTDQKCSASAPALKSIIKKLVKT 261
>emb|CAD41397.1| OJ000223_09.9 [Oryza sativa (japonica cultivar-group)]
Length = 346
Score = 137 bits (344), Expect = 1e-31
Identities = 62/84 (73%), Positives = 76/84 (89%)
Frame = -3
Query: 514 WTLEYMREKAPELLNLIACTEVFDSSGGGAVKMCKEMEVPFLGKVPLDPKLCKAAEEGRS 335
W L Y++EKAPELL+++AC+EVFDSS GGA KMC+EMEVPFLGKVP+DP+LCKAAEEGRS
Sbjct: 262 WALNYIKEKAPELLSVVACSEVFDSSKGGAEKMCQEMEVPFLGKVPMDPQLCKAAEEGRS 321
Query: 334 CFGDKDCFVSAPALKNIIEKLLET 263
CF D+ C SAPALK+II+KL++T
Sbjct: 322 CFTDQKCSASAPALKSIIKKLVKT 345
>ref|NP_568748.1| nucleotide-binding protein; protein id: At5g50960.1, supported by
cDNA: gi_13430793 [Arabidopsis thaliana]
gi|23297101|gb|AAN13093.1| nucleotide-binding protein
[Arabidopsis thaliana]
Length = 350
Score = 122 bits (307), Expect = 2e-27
Identities = 53/77 (68%), Positives = 70/77 (90%)
Frame = -3
Query: 499 MREKAPELLNLIACTEVFDSSGGGAVKMCKEMEVPFLGKVPLDPKLCKAAEEGRSCFGDK 320
+R+ APELL+++AC+EVFDSSGGGA +MC+EM VPFLGKVP+DP+LCKAAE+G+SCF D
Sbjct: 267 LRKNAPELLDIVACSEVFDSSGGGAERMCREMGVPFLGKVPMDPQLCKAAEQGKSCFEDN 326
Query: 319 DCFVSAPALKNIIEKLL 269
C +SAPALK+II+K++
Sbjct: 327 KCLISAPALKSIIQKVV 343
>gb|AAK26019.1|AF360309_1 putative nucleotide-binding protein [Arabidopsis thaliana]
Length = 350
Score = 122 bits (306), Expect = 2e-27
Identities = 53/76 (69%), Positives = 69/76 (90%)
Frame = -3
Query: 499 MREKAPELLNLIACTEVFDSSGGGAVKMCKEMEVPFLGKVPLDPKLCKAAEEGRSCFGDK 320
+R+ APELL+++AC+EVFDSSGGGA +MC+EM VPFLGKVP+DP+LCKAAE+G+SCF D
Sbjct: 267 LRKNAPELLDIVACSEVFDSSGGGAERMCREMGVPFLGKVPMDPQLCKAAEQGKSCFEDN 326
Query: 319 DCFVSAPALKNIIEKL 272
C +SAPALK+II+K+
Sbjct: 327 KCLISAPALKSIIQKV 342
>gb|AAN86569.1| nucleotide binding protein [Cypripedium parviflorum var. pubescens]
Length = 352
Score = 118 bits (296), Expect = 3e-26
Identities = 56/86 (65%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Frame = -3
Query: 514 WTLEYMREKAPELLNLIACTEVFDSSGGGAVKMCKEMEVPFLGKVPLDPKLCKAAEEGRS 335
W Y+R+ APELL+L AC+EVFD SGGGA KMC EM VPFLGKVPLDP+LCKAAE+GRS
Sbjct: 266 WAQRYIRQNAPELLSLFACSEVFDISGGGAAKMCTEMGVPFLGKVPLDPQLCKAAEDGRS 325
Query: 334 CF-GDKDCFVSAPALKNIIEKLLETN 260
CF D+ C +SAP+L I E+L+ ++
Sbjct: 326 CFQEDQKCRLSAPSLPRIAEQLIASH 351
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,562,494
Number of Sequences: 1393205
Number of extensions: 8130723
Number of successful extensions: 25142
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 24439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25124
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
