Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002422A_C01 KMC002422A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P41382|IF4U_TOBAC Eukaryotic initiation factor 4A-10 (eIF-4A-... 248 4e-65
ref|NP_175829.1| eukaryotic translation initiation factor 4A-2 (... 248 4e-65
gb|AAF19805.1| EIF4A protein [Brassica oleracea] 247 7e-65
pir||S52020 translation initiation factor eIF-4A.15 - common tob... 247 9e-65
pir||S52017 translation initiation factor eIF-4A.9 - common tobacco 246 2e-64
>sp|P41382|IF4U_TOBAC Eukaryotic initiation factor 4A-10 (eIF-4A-10) (eIF4A-10)
gi|1362118|pir||S55898 translation initiation factor
eIF-4A.10 - common tobacco gi|475213|emb|CAA55642.1|
translation initiation factor (eIF-4A) [Nicotiana
tabacum] gi|475216|emb|CAA55641.1| translation
initiation factor (eIF-4A) [Nicotiana tabacum]
Length = 413
Score = 248 bits (633), Expect = 4e-65
Identities = 123/130 (94%), Positives = 126/130 (96%)
Frame = -2
Query: 595 IFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 416
IFVNTRRKVDWLTDKMRS DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI
Sbjct: 284 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 343
Query: 415 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYHVTVE 236
DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT DD RMLSDIQKFY+V +E
Sbjct: 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIE 403
Query: 235 ELPSNVADLL 206
ELP+NVADLL
Sbjct: 404 ELPANVADLL 413
>ref|NP_175829.1| eukaryotic translation initiation factor 4A-2 (eIF4A-2); protein
id: At1g54270.1, supported by cDNA: 3997., supported by
cDNA: gi_14423371, supported by cDNA: gi_16226680
[Arabidopsis thaliana] gi|1170505|sp|P41377|IF42_ARATH
Eukaryotic initiation factor 4A-2 (eIF-4A-2) (eIF4A-2)
gi|322504|pir||JC1453 translation initiation factor
eIF-4A2 - Arabidopsis thaliana gi|16556|emb|CAA46189.1|
eukaryotic translation initiation factor 4A-2
[Arabidopsis thaliana]
gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic
Initiation Factor 4A-2 [Arabidopsis thaliana]
gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic
Initiation Factor 4A-2 [Arabidopsis thaliana]
gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52
[Arabidopsis thaliana] gi|21593545|gb|AAM65512.1|
eukaryotic translation initiation factor 4A, putative
[Arabidopsis thaliana]
Length = 412
Score = 248 bits (633), Expect = 4e-65
Identities = 124/130 (95%), Positives = 126/130 (96%)
Frame = -2
Query: 595 IFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 416
IFVNTRRKVDWLTDKMRS DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI
Sbjct: 283 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 342
Query: 415 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYHVTVE 236
DVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVTLDD RML DIQKFY+V VE
Sbjct: 343 DVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVE 402
Query: 235 ELPSNVADLL 206
ELPSNVADLL
Sbjct: 403 ELPSNVADLL 412
>gb|AAF19805.1| EIF4A protein [Brassica oleracea]
Length = 354
Score = 247 bits (631), Expect = 7e-65
Identities = 123/130 (94%), Positives = 126/130 (96%)
Frame = -2
Query: 595 IFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 416
IFVNTRRKVDWLTDKMRS DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI
Sbjct: 225 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 284
Query: 415 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYHVTVE 236
DVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINF+T DD RMLSDIQKFY+V VE
Sbjct: 285 DVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTTDDERMLSDIQKFYNVVVE 344
Query: 235 ELPSNVADLL 206
ELPSNVADLL
Sbjct: 345 ELPSNVADLL 354
>pir||S52020 translation initiation factor eIF-4A.15 - common tobacco
Length = 413
Score = 247 bits (630), Expect = 9e-65
Identities = 122/130 (93%), Positives = 126/130 (96%)
Frame = -2
Query: 595 IFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 416
IFVNTRRKVDWLTDKMRS DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI
Sbjct: 284 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 343
Query: 415 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYHVTVE 236
DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT DD RMLSDIQ+FY+V +E
Sbjct: 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVVIE 403
Query: 235 ELPSNVADLL 206
ELP+NVADLL
Sbjct: 404 ELPANVADLL 413
>pir||S52017 translation initiation factor eIF-4A.9 - common tobacco
Length = 413
Score = 246 bits (627), Expect = 2e-64
Identities = 121/130 (93%), Positives = 126/130 (96%)
Frame = -2
Query: 595 IFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 416
IFVNTRRKVDWLTDKMRS DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI
Sbjct: 284 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 343
Query: 415 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYHVTVE 236
DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV+INFVT DD RMLSDIQ+FY+V +E
Sbjct: 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNVVIE 403
Query: 235 ELPSNVADLL 206
ELP+NVADLL
Sbjct: 404 ELPANVADLL 413
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,820,578
Number of Sequences: 1393205
Number of extensions: 9580216
Number of successful extensions: 27745
Number of sequences better than 10.0: 2278
Number of HSP's better than 10.0 without gapping: 26909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27601
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
