Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002420A_C01 KMC002420A_c01
(352 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_502027.1| Putative membrane protein, with at least 3 tran... 31 3.5
pir||S24066 protein-tyrosine kinase (EC 2.7.1.112), receptor typ... 30 6.0
ref|NP_005415.1| tyrosine kinase with immunoglobulin and epiderm... 30 6.0
ref|NP_232917.1| conserved hypothetical protein [Vibrio cholerae... 30 7.8
ref|NP_174011.1| hypothetical protein; protein id: At1g26890.1 [... 30 7.8
>ref|NP_502027.1| Putative membrane protein, with at least 3 transmembrane domains,
nematode specific [Caenorhabditis elegans]
gi|7511231|pir||T27931 hypothetical protein ZK596.3 -
Caenorhabditis elegans gi|3881728|emb|CAA93432.1|
Hypothetical protein ZK596.3 [Caenorhabditis elegans]
Length = 339
Score = 31.2 bits (69), Expect = 3.5
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = +2
Query: 122 NHIRTLEKVKDFTSII*APVHNITLLKLSPKCHYTRTHLMAFELSNVIFVRLSRGQKL 295
NH TLE++ F + VHN+ L +S + +HLM + +I + +S KL
Sbjct: 162 NHSPTLERIIGFPLVTVETVHNLCLYVISALQYEQDSHLMQYTRMAMILLTISTVLKL 219
>pir||S24066 protein-tyrosine kinase (EC 2.7.1.112), receptor type tie precursor
- human
Length = 1138
Score = 30.4 bits (67), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 119 RNHIRTLEKVKDFTSII*APVHNITLLKLSPKCHYT 226
R H R + D+++I+ P N+TL+ L PK Y+
Sbjct: 481 RLHYRPQDSTMDWSTIVVDPSENVTLMNLRPKTGYS 516
>ref|NP_005415.1| tyrosine kinase with immunoglobulin and epidermal growth factor
homology domains; Tyrosine kinase with immunoglobulin
and epidermal growth factor [Homo sapiens]
gi|549081|sp|P35590|TIE1_HUMAN Tyrosine-protein kinase
receptor Tie-1 precursor gi|396815|emb|CAA43290.1|
receptor tyrosine kinase [Homo sapiens]
gi|23398605|gb|AAH38239.1| tyrosine kinase with
immunoglobulin and epidermal growth factor homology
domains [Homo sapiens]
Length = 1138
Score = 30.4 bits (67), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 119 RNHIRTLEKVKDFTSII*APVHNITLLKLSPKCHYT 226
R H R + D+++I+ P N+TL+ L PK Y+
Sbjct: 481 RLHYRPQDSTMDWSTIVVDPSENVTLMNLRPKTGYS 516
>ref|NP_232917.1| conserved hypothetical protein [Vibrio cholerae]
gi|20138010|sp|Q9KM62|ERIC_VIBCH Voltage-gated ClC-type
chloride channel eriC gi|11279572|pir||C82449 conserved
hypothetical protein VCA0526 [imported] - Vibrio
cholerae (strain N16961 serogroup O1)
gi|9657932|gb|AAF96429.1| conserved hypothetical protein
[Vibrio cholerae]
Length = 468
Score = 30.0 bits (66), Expect = 7.8
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 155 FTSII*APVHNITLLKLSPKCHYTRTHLMAFELSNVIFVRLSRGQKLNSNLASMALRIQK 334
F + + AP+ I L+ ++ L+ L VIF +L GQ + S L L+ QK
Sbjct: 396 FAATVRAPITGILLVIEMTNNYHLILPLIITSLGAVIFAQLLGGQPIYSQLLHRTLKNQK 455
Query: 335 HKQQ 346
+QQ
Sbjct: 456 LQQQ 459
>ref|NP_174011.1| hypothetical protein; protein id: At1g26890.1 [Arabidopsis
thaliana] gi|25518718|pir||G86395 hypothetical protein
T2P11.8 - Arabidopsis thaliana gi|4262178|gb|AAD14495.1|
25726
Length = 280
Score = 30.0 bits (66), Expect = 7.8
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 209 PKCHYTRTHLMAFELSNVIFVRLSRGQKLNSNLASMALRIQKHKQQK 349
PKC YT L+ LSN I V +S +L S L +++LR +K ++
Sbjct: 77 PKCLYTCNTLVDLSLSNKILVNVSSPVRLPS-LLTLSLRFVVYKDEE 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,125,731
Number of Sequences: 1393205
Number of extensions: 4984254
Number of successful extensions: 8084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8084
length of database: 448,689,247
effective HSP length: 92
effective length of database: 320,514,387
effective search space used: 7692345288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
