Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002418A_C01 KMC002418A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC38367.1| unnamed protein product [Mus musculus] 42 0.004
gb|AAH19952.1| naked cuticle 1 homolog (Drosophila) [Mus musculus] 42 0.004
ref|NP_082462.1| naked cuticle-2; RIKEN cDNA 2210403L10 gene [Mu... 42 0.004
dbj|BAB25908.1| unnamed protein product [Mus musculus] 42 0.004
pir||S68099 seminal fluid protein D(3-V) precursor - yellow meal... 40 0.028
>dbj|BAC38367.1| unnamed protein product [Mus musculus]
Length = 449
Score = 42.4 bits (98), Expect = 0.004
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 8/49 (16%)
Frame = -2
Query: 441 GDRRPFLRSHSAVQRLPEM--------EMMDRHDVHHYRRHHAHGHHHH 319
G +P + H V+ LP M ++ RH+ HH+ HH H HHHH
Sbjct: 397 GHGQPTMVEHEVVRDLPPMLGPEGYVMPVVQRHEHHHHHEHHHHHHHHH 445
>gb|AAH19952.1| naked cuticle 1 homolog (Drosophila) [Mus musculus]
Length = 461
Score = 42.4 bits (98), Expect = 0.004
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 8/49 (16%)
Frame = -2
Query: 441 GDRRPFLRSHSAVQRLPEM--------EMMDRHDVHHYRRHHAHGHHHH 319
G +P + H V+ LP M ++ RH+ HH+ HH H HHHH
Sbjct: 409 GHGQPTMVEHEVVRDLPPMLGPEGYVMPVVQRHEHHHHHEHHHHHHHHH 457
>ref|NP_082462.1| naked cuticle-2; RIKEN cDNA 2210403L10 gene [Mus musculus]
gi|14211716|gb|AAK57485.1| naked cuticle-2 [Mus
musculus]
Length = 461
Score = 42.4 bits (98), Expect = 0.004
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 8/49 (16%)
Frame = -2
Query: 441 GDRRPFLRSHSAVQRLPEM--------EMMDRHDVHHYRRHHAHGHHHH 319
G +P + H V+ LP M ++ RH+ HH+ HH H HHHH
Sbjct: 409 GHGQPTMVEHEVVRDLPPMLGPEGYVMPVVQRHEHHHHHEHHHHHHHHH 457
>dbj|BAB25908.1| unnamed protein product [Mus musculus]
Length = 461
Score = 42.4 bits (98), Expect = 0.004
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 8/49 (16%)
Frame = -2
Query: 441 GDRRPFLRSHSAVQRLPEM--------EMMDRHDVHHYRRHHAHGHHHH 319
G +P + H V+ LP M ++ RH+ HH+ HH H HHHH
Sbjct: 409 GHGQPTMVEHEVVRDLPPMLGPEGYVMPVVQRHEHHHHHEHHHHHHHHH 457
>pir||S68099 seminal fluid protein D(3-V) precursor - yellow mealworm
(fragment)
Length = 196
Score = 39.7 bits (91), Expect = 0.028
Identities = 23/70 (32%), Positives = 32/70 (44%)
Frame = -1
Query: 568 RAHRRRSPTVPEVSQQSAEAPGDGDDGSPRDPLR*RCDRAHRRRSPTVPEVSQRCAEAPG 389
+A SPTVP +S ++ + P + PR L R +A SP VP S +AP
Sbjct: 118 QAPNNDSPTVPRMSMEARKVPNNDSPAVPRASLEAR--KAPNNDSPAVPRASLEARKAPN 175
Query: 388 DGDDGSPRCS 359
+ PR S
Sbjct: 176 NDSPAVPRAS 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,645,608
Number of Sequences: 1393205
Number of extensions: 11773883
Number of successful extensions: 70939
Number of sequences better than 10.0: 376
Number of HSP's better than 10.0 without gapping: 46914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63386
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
