Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002414A_C01 KMC002414A_c01
(791 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65229.1| oligouridylate binding protein, putative [Arabido... 184 2e-45
ref|NP_188026.1| oligouridylate binding protein (UBP1), putative... 181 1e-44
ref|NP_564018.1| oligouridylate binding protein (UBP1), putative... 176 3e-43
pir||C86310 protein F1L3.2 [imported] - Arabidopsis thaliana gi|... 160 2e-38
ref|NP_175810.1| oligouridylate binding protein (UBP1), putative... 149 3e-35
>gb|AAM65229.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
Length = 427
Score = 184 bits (466), Expect = 2e-45
Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 4/118 (3%)
Frame = -1
Query: 791 STHAEAALAIQMGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAPATLPGFSATDLLA 612
+TH EAALAIQMGNTQ L +QIKCSWG+KPTPPGTASNPLPPPAPA +PG SA DLL
Sbjct: 310 NTHPEAALAIQMGNTQPYLFNRQIKCSWGNKPTPPGTASNPLPPPAPAPVPGLSAADLLN 369
Query: 611 YERQLAMSKMGGVHALMHPQGQHPLKQA----AIGASQAIYDGGFQNLAAAQPMMYYQ 450
YERQLA+SKM V+ALMHPQGQHPL+QA A GA+ A+YDGGFQN+AAAQ +MYYQ
Sbjct: 370 YERQLALSKMASVNALMHPQGQHPLRQAHGINAAGATAAMYDGGFQNVAAAQQLMYYQ 427
>ref|NP_188026.1| oligouridylate binding protein (UBP1), putative; protein id:
At3g14100.1, supported by cDNA: 37712. [Arabidopsis
thaliana] gi|9294635|dbj|BAB02974.1| RNA binding protein
nucleolysin; oligouridylate binding protein [Arabidopsis
thaliana] gi|22655004|gb|AAM98093.1| AT3g14100/MAG2_5
[Arabidopsis thaliana] gi|28416511|gb|AAO42786.1|
AT3g14100/MAG2_5 [Arabidopsis thaliana]
Length = 427
Score = 181 bits (458), Expect = 1e-44
Identities = 88/118 (74%), Positives = 99/118 (83%), Gaps = 4/118 (3%)
Frame = -1
Query: 791 STHAEAALAIQMGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAPATLPGFSATDLLA 612
+TH EAALAIQMGNTQ L +QIKCSWG+KPTPPGTASNPLPPPAPA +PG SA DLL
Sbjct: 310 NTHPEAALAIQMGNTQPYLFNRQIKCSWGNKPTPPGTASNPLPPPAPAPVPGLSAADLLN 369
Query: 611 YERQLAMSKMGGVHALMHPQGQHPLKQA----AIGASQAIYDGGFQNLAAAQPMMYYQ 450
YERQLA+SKM V+ALMH QGQHPL+QA A GA+ A+YDGGFQN+AAAQ +MYYQ
Sbjct: 370 YERQLALSKMASVNALMHQQGQHPLRQAHGINAAGATAAMYDGGFQNVAAAQQLMYYQ 427
>ref|NP_564018.1| oligouridylate binding protein (UBP1), putative; protein id:
At1g17370.1, supported by cDNA: 17210. [Arabidopsis
thaliana] gi|9665134|gb|AAF97318.1|AC007843_21 Putative
RNA binding protein [Arabidopsis thaliana]
gi|21553830|gb|AAM62923.1| oligouridylate binding
protein, putative [Arabidopsis thaliana]
Length = 419
Score = 176 bits (447), Expect = 3e-43
Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 4/118 (3%)
Frame = -1
Query: 791 STHAEAALAIQMGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAPATLPGFSATDLLA 612
STH EAALAIQMGNT S L G+Q+KCSWGSKPTP GTASNPLPPPAPA +PGFSA+DLLA
Sbjct: 305 STHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNPLPPPAPAPIPGFSASDLLA 364
Query: 611 YERQLAMSKMGGVHALM-HPQGQHPLKQAAIGA---SQAIYDGGFQNLAAAQPMMYYQ 450
YERQLAMSKM G++ +M HPQGQH KQAA+GA +QAIYDGG+QN AQ +MYYQ
Sbjct: 365 YERQLAMSKMAGMNPMMHHPQGQHAFKQAAMGATGSNQAIYDGGYQN---AQQLMYYQ 419
>pir||C86310 protein F1L3.2 [imported] - Arabidopsis thaliana
gi|8778484|gb|AAF79492.1|AC022492_36 F1L3.2 [Arabidopsis
thaliana]
Length = 575
Score = 160 bits (405), Expect = 2e-38
Identities = 89/149 (59%), Positives = 100/149 (66%), Gaps = 35/149 (23%)
Frame = -1
Query: 791 STHAEAALAIQMGNTQSILCGKQIK-------------------------------CSWG 705
STH EAALAIQMGNT S L G+Q+K CSWG
Sbjct: 430 STHVEAALAIQMGNTHSYLSGRQMKVKLTNLNCSFVGLTILFGLGMLKLLCSLFLQCSWG 489
Query: 704 SKPTPPGTASNPLPPPAPATLPGFSATDLLAYERQLAMSKMGGVHALM-HPQGQHPLKQA 528
SKPTP GTASNPLPPPAPA +PGFSA+DLLAYERQLAMSKM G++ +M HPQGQH KQA
Sbjct: 490 SKPTPAGTASNPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAFKQA 549
Query: 527 AIGA---SQAIYDGGFQNLAAAQPMMYYQ 450
A+GA +QAIYDGG+QN AQ +MYYQ
Sbjct: 550 AMGATGSNQAIYDGGYQN---AQQLMYYQ 575
>ref|NP_175810.1| oligouridylate binding protein (UBP1), putative; protein id:
At1g54080.1, supported by cDNA: gi_13194791, supported
by cDNA: gi_13605626 [Arabidopsis thaliana]
gi|25405690|pir||E96581 hypothetical protein F15I1.16
[imported] - Arabidopsis thaliana
gi|4587549|gb|AAD25780.1|AC006577_16 Similar to
gb|U55861 RNA binding protein nucleolysin (TIAR) from
Mus musculus and contains several PF|00076 RNA
recognition motif domains. ESTs gb|T21032 and gb|T44127
come from this gene. [Arabidopsis thaliana]
gi|13194792|gb|AAK15558.1|AF348587_1 putative
oligouridylate binding protein [Arabidopsis thaliana]
gi|13605627|gb|AAK32807.1|AF361639_1 At1g54080/F15I1_16
[Arabidopsis thaliana] gi|22137190|gb|AAM91440.1|
At1g54080/F15I1_16 [Arabidopsis thaliana]
Length = 426
Score = 149 bits (377), Expect = 3e-35
Identities = 76/120 (63%), Positives = 91/120 (75%), Gaps = 6/120 (5%)
Frame = -1
Query: 791 STHAEAALAIQMGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAPATLPGFSATDLLA 612
+TH EAALAIQMGN Q L +QI+CSWG+KPTP GTASNPLPPPAPA++P SA DLLA
Sbjct: 314 NTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLA 373
Query: 611 YERQLAMSKMGGVHALMHPQGQHPLKQAAI-----GASQAIYDGGFQNLAAA-QPMMYYQ 450
YERQLA++K MHPQ QH L+QA + G + A+YDGG+QN+AAA Q +MYYQ
Sbjct: 374 YERQLALAK-------MHPQAQHSLRQAGLGVNVAGGTAAMYDGGYQNVAAAHQQLMYYQ 426
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 746,805,756
Number of Sequences: 1393205
Number of extensions: 17632011
Number of successful extensions: 71867
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69851
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39775824764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
