Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002413A_C01 KMC002413A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199597.1| putative protein; protein id: At5g47860.1, supp... 182 4e-45
gb|ZP_00043480.1| hypothetical protein [Magnetococcus sp. MC-1] 33 2.1
gb|EAA15430.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.1
ref|NP_085092.1|ND6_15618 NADH dehydrogenase subunit 6 [Chrysomy... 33 3.7
pir||G86434 protein F17F8.23 [imported] - Arabidopsis thaliana g... 32 4.8
>ref|NP_199597.1| putative protein; protein id: At5g47860.1, supported by cDNA:
gi_16648765 [Arabidopsis thaliana]
gi|10177922|dbj|BAB11333.1|
gene_id:MCA23.20~pir||S75306~similar to unknown protein
[Arabidopsis thaliana] gi|16648766|gb|AAL25574.1|
AT5g47860/MCA23_20 [Arabidopsis thaliana]
gi|22655374|gb|AAM98279.1| At5g47860/MCA23_20
[Arabidopsis thaliana]
Length = 431
Score = 182 bits (461), Expect = 4e-45
Identities = 89/118 (75%), Positives = 103/118 (86%)
Frame = -3
Query: 595 DDLIDETSILAQVLSSESAISSILDMSIRKLPGDHGLPLQQALPDVPPAMADAVNRGSEL 416
DD IDETSILAQVL ES+ISS LDMSIR LPGDHGLPLQQALPDVPP MA+AVNRGSE
Sbjct: 314 DDSIDETSILAQVLGVESSISSKLDMSIRTLPGDHGLPLQQALPDVPPGMAEAVNRGSEF 373
Query: 415 LSNLTVGTPWETVAKEVGSTLGMDSKVLRSQVSKEMDLLVDVISSWIASNAGPKLLRP 242
L+N+ VGTPWE++AKEVG +LGMDSK+LR+ +SK++ LVD I+SW+ SN GPKLLRP
Sbjct: 374 LANIAVGTPWESMAKEVGGSLGMDSKILRADMSKDLAQLVDAITSWMISNMGPKLLRP 431
>gb|ZP_00043480.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 171
Score = 33.5 bits (75), Expect = 2.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 412 TKARFHD*LHQPWLVEHLVGPAAMEDRDLQATCV 513
T+A+ H HQPW +E ++ P M+ LQA+C+
Sbjct: 21 TQAQSH---HQPWCIEGVMMPKTMDSATLQASCI 51
>gb|EAA15430.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 463
Score = 33.5 bits (75), Expect = 2.1
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -3
Query: 343 SKVLRSQVSKEMDLLVDVISSWIASNAGPKLLRP*GHTTKKFINNANRKDV 191
SK + Q+ K +D D+ + WI + KLL K F+N+AN+K+V
Sbjct: 172 SKKITEQIGKNVDPYYDMSNKWIENIMSSKLLT----FLKSFLNDANKKNV 218
>ref|NP_085092.1|ND6_15618 NADH dehydrogenase subunit 6 [Chrysomya chloropyga]
gi|13384227|gb|AAK21328.1|AF352790_11 NADH subunit 6
[Chrysomya chloropyga]
Length = 174
Score = 32.7 bits (73), Expect = 3.7
Identities = 25/76 (32%), Positives = 37/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 9 KKLIISISQLFPSQCRLYFYSNG*FAEFYLLSRID*YD*H-YTREDGTSVNANFNKPIHF 185
K L+IS+S F LYF ++ L YD + Y E+ S+N +N P
Sbjct: 83 KLLLISLSIFFLMIITLYFMDKNLLLQYQNLEVKSIYDMNSYLTENSLSLNKLYNYP--- 139
Query: 186 YNTSFLFALLMNFLVV 233
T+ L LLMN+L++
Sbjct: 140 --TNLLTILLMNYLLI 153
>pir||G86434 protein F17F8.23 [imported] - Arabidopsis thaliana
gi|9755389|gb|AAF98196.1|AC000107_19 F17F8.23
[Arabidopsis thaliana]
Length = 649
Score = 32.3 bits (72), Expect = 4.8
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = -2
Query: 473 GPTRCSTSHG*CS*SWKRAFVKSYCRNTMGDSCQRSREHTRHGFESPSFPSIKGDG---S 303
GP RCS + G C K+ S C N C+ P KGDG
Sbjct: 493 GPARCSINQGGCWSETKKGLTFSACSNLETSGCRCP-------------PGFKGDGLKCE 539
Query: 302 ACGCD 288
AC CD
Sbjct: 540 ACQCD 544
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,350,610
Number of Sequences: 1393205
Number of extensions: 10536380
Number of successful extensions: 29365
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 28386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29361
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
