Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002412A_C10 KMC002412A_c10
(833 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB93307.1| B1045F02.27 [Oryza sativa (japonica cultivar-gro... 33 6.7
gb|EAA31922.1| hypothetical protein [Neurospora crassa] 33 6.7
emb|CAD37044.1| related to chromatin assembly complex, subunit p... 33 6.7
ref|NP_508292.1| Putative nuclear protein family member, nematod... 33 6.7
>dbj|BAB93307.1| B1045F02.27 [Oryza sativa (japonica cultivar-group)]
gi|21327995|dbj|BAC00583.1| B1151H08.2 [Oryza sativa
(japonica cultivar-group)]
Length = 281
Score = 32.7 bits (73), Expect = 6.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 754 MRCKTP*EISDSDNLRREPPPATVTTVFSD*PSPEMSLNSEPGSSPPPLA 605
+ C+ P + +D RR PPP TV + +D +P +S G PPLA
Sbjct: 5 IHCRRPPSSAAAD--RRPPPPPTVEVLAADSRAPRRPPSSTAGRRAPPLA 52
>gb|EAA31922.1| hypothetical protein [Neurospora crassa]
Length = 692
Score = 32.7 bits (73), Expect = 6.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Frame = -2
Query: 739 P*EISDSDNLRREPPPAT---------VTTVFSD*PSPEMSLNSEPGSSPPPLAELII 593
P D +N+R PPP++ + SD SP L+ P SPP LA L I
Sbjct: 31 PSSFDDKENVRSSPPPSSGPATPRARKASPALSDASSPLDRLSRSPSLSPPRLAPLTI 88
>emb|CAD37044.1| related to chromatin assembly complex, subunit p90 [Neurospora
crassa]
Length = 712
Score = 32.7 bits (73), Expect = 6.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Frame = -2
Query: 739 P*EISDSDNLRREPPPAT---------VTTVFSD*PSPEMSLNSEPGSSPPPLAELII 593
P D +N+R PPP++ + SD SP L+ P SPP LA L I
Sbjct: 31 PSSFDDKENVRSSPPPSSGPATPRARKASPALSDASSPLDRLSRSPSLSPPRLAPLTI 88
>ref|NP_508292.1| Putative nuclear protein family member, nematode specific
[Caenorhabditis elegans] gi|7505357|pir||T34434
hypothetical protein K06A9.1a - Caenorhabditis elegans
gi|3834294|gb|AAC70890.1| Hypothetical protein K06A9.1b
[Caenorhabditis elegans]
Length = 2232
Score = 32.7 bits (73), Expect = 6.7
Identities = 21/78 (26%), Positives = 32/78 (40%)
Frame = -2
Query: 832 PPPSNSDLRRTNEFLEKATTPWTPLDMRCKTP*EISDSDNLRREPPPATVTTVFSD*PSP 653
P PS S + + + TP + +P E S S P T T S PSP
Sbjct: 968 PIPSTSQNTNPSTSSGSSMSTQTPQSSQSTSPVESSTSGATSSSGSPGTTLTSISPSPSP 1027
Query: 652 EMSLNSEPGSSPPPLAEL 599
++ S GS+ P ++ +
Sbjct: 1028 SSTIGSSQGSTSPVVSTI 1045
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 705,338,615
Number of Sequences: 1393205
Number of extensions: 15920753
Number of successful extensions: 44130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43953
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43201326735
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
