Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002406A_C02 KMC002406A_c02
(1242 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199522.1| Lil3 protein; protein id: At5g47110.1 [Arabidop... 273 4e-72
pir||G71445 hypothetical protein - Arabidopsis thaliana gi|22451... 272 9e-72
gb|AAM63936.1| Lil3 protein [Arabidopsis thaliana] 272 9e-72
ref|NP_567532.1| Lil3 protein; protein id: At4g17600.1, supporte... 272 9e-72
pir||H71445 hypothetical protein - Arabidopsis thaliana gi|22451... 57 5e-07
>ref|NP_199522.1| Lil3 protein; protein id: At5g47110.1 [Arabidopsis thaliana]
gi|8978078|dbj|BAA98106.1| Lil3 protein [Arabidopsis
thaliana]
Length = 254
Score = 273 bits (698), Expect = 4e-72
Identities = 142/244 (58%), Positives = 170/244 (69%), Gaps = 10/244 (4%)
Frame = -1
Query: 1050 FSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGAS-----DSAATAVE- 889
FS +SSS P+L L K L + +ASSDNG + A+ AVE
Sbjct: 4 FSPPISSSLQNPNLIPKISTSLLSTKRFSLISVP-RASSDNGTTSPVVEIPKPASVAVEE 62
Query: 888 ----SPPEKISVGTNGSASSAAAAAAEELKIPGGFEDPRWVAGTWDLMQFRKNGSTDWDA 721
SP E S NG+ A ++ E I +++ +WV GTWDL QF K+G TDWD+
Sbjct: 63 VPVKSPAESSSASENGAVGGEATDSSTETVIK--YQNAKWVNGTWDLKQFEKDGKTDWDS 120
Query: 720 VIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEAERLNGRAAMIGFFM 541
VI +EA+RRKWL+DNPE++SN+ VVFDTSI+PWWAW+KR+HLPEAE LNGRAAMIGFFM
Sbjct: 121 VIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRAAMIGFFM 180
Query: 540 AYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKKLFDETTFYDKQWQA 361
AY VDSLTGVGLVDQ NF CKTLLF+AVAGVL IRKNEDL+ LK LFDETT YDKQWQA
Sbjct: 181 AYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDETTLYDKQWQA 240
Query: 360 TWQD 349
W++
Sbjct: 241 AWKE 244
>pir||G71445 hypothetical protein - Arabidopsis thaliana
gi|2245118|emb|CAB10540.1| hypothetical protein
[Arabidopsis thaliana] gi|7268512|emb|CAB78763.1|
hypothetical protein [Arabidopsis thaliana]
Length = 350
Score = 272 bits (695), Expect = 9e-72
Identities = 145/258 (56%), Positives = 176/258 (68%), Gaps = 15/258 (5%)
Frame = -1
Query: 1077 MASFSPLTRFSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGASDSAAT 898
MA FSP SSS P+ F L L + +ASSD+G+ S +AA
Sbjct: 1 MALFSP-----PISSSSLQNPNFIPKFSFSLLSSNRFSLLSVT-RASSDSGS-TSPTAAV 53
Query: 897 AVESP-PEKISVGTNGSASSAA-----------AAAAEELKIPGG---FEDPRWVAGTWD 763
+VE+P P ++ V ++ A A EE+K F+D RW+ GTWD
Sbjct: 54 SVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWD 113
Query: 762 LMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEA 583
L QF K+G TDWD+VI AEA+RRKWL++NPE++SN+ PV+FDTSI+PWWAWIKR+HLPEA
Sbjct: 114 LKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEA 173
Query: 582 ERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKK 403
E LNGRAAMIGFFMAY VDSLTGVGLVDQ NF CKTLLF+AVAGVL IRKNED++ LK
Sbjct: 174 ELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKN 233
Query: 402 LFDETTFYDKQWQATWQD 349
LFDETT YDKQWQA W++
Sbjct: 234 LFDETTLYDKQWQAAWKN 251
>gb|AAM63936.1| Lil3 protein [Arabidopsis thaliana]
Length = 262
Score = 272 bits (695), Expect = 9e-72
Identities = 145/258 (56%), Positives = 176/258 (68%), Gaps = 15/258 (5%)
Frame = -1
Query: 1077 MASFSPLTRFSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGASDSAAT 898
MA FSP SSS P+ F L L + +ASSD+G+ S +AA
Sbjct: 1 MALFSP-----PISSSSLQNPNFIPKFSFSLLSSNRFSLLSVT-RASSDSGS-TSPTAAV 53
Query: 897 AVESP-PEKISVGTNGSASSAA-----------AAAAEELKIPGG---FEDPRWVAGTWD 763
+VE+P P ++ V ++ A A EE+K F+D RW+ GTWD
Sbjct: 54 SVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVIKFQDARWINGTWD 113
Query: 762 LMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEA 583
L QF K+G TDWD+VI AEA+RRKWL++NPE++SN+ PV+FDTSI+PWWAWIKR+HLPEA
Sbjct: 114 LKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEA 173
Query: 582 ERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKK 403
E LNGRAAMIGFFMAY VDSLTGVGLVDQ NF CKTLLF+AVAGVL IRKNED++ LK
Sbjct: 174 ELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKN 233
Query: 402 LFDETTFYDKQWQATWQD 349
LFDETT YDKQWQA W++
Sbjct: 234 LFDETTLYDKQWQAAWKN 251
>ref|NP_567532.1| Lil3 protein; protein id: At4g17600.1, supported by cDNA: 29150.,
supported by cDNA: gi_14030672, supported by cDNA:
gi_18491100, supported by cDNA: gi_4741965 [Arabidopsis
thaliana] gi|25455770|pir||T52310 Lil3 protein [imported]
- Arabidopsis thaliana
gi|4741966|gb|AAD28780.1|AF134133_1 Lil3 protein
[Arabidopsis thaliana]
gi|14030673|gb|AAK53011.1|AF375427_1 AT4g17600/dl4835w
[Arabidopsis thaliana] gi|18491101|gb|AAL69517.1|
AT4g17600/dl4835w [Arabidopsis thaliana]
gi|22530970|gb|AAM96989.1| Lil3 protein [Arabidopsis
thaliana] gi|23198388|gb|AAN15721.1| Lil3 protein
[Arabidopsis thaliana] gi|23306350|gb|AAN17402.1| Lil3
protein [Arabidopsis thaliana] gi|25084208|gb|AAN72196.1|
Lil3 protein [Arabidopsis thaliana]
Length = 262
Score = 272 bits (695), Expect = 9e-72
Identities = 145/258 (56%), Positives = 176/258 (68%), Gaps = 15/258 (5%)
Frame = -1
Query: 1077 MASFSPLTRFSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGASDSAAT 898
MA FSP SSS P+ F L L + +ASSD+G+ S +AA
Sbjct: 1 MALFSP-----PISSSSLQNPNFIPKFSFSLLSSNRFSLLSVT-RASSDSGS-TSPTAAV 53
Query: 897 AVESP-PEKISVGTNGSASSAA-----------AAAAEELKIPGG---FEDPRWVAGTWD 763
+VE+P P ++ V ++ A A EE+K F+D RW+ GTWD
Sbjct: 54 SVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWD 113
Query: 762 LMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEA 583
L QF K+G TDWD+VI AEA+RRKWL++NPE++SN+ PV+FDTSI+PWWAWIKR+HLPEA
Sbjct: 114 LKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEA 173
Query: 582 ERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKK 403
E LNGRAAMIGFFMAY VDSLTGVGLVDQ NF CKTLLF+AVAGVL IRKNED++ LK
Sbjct: 174 ELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKN 233
Query: 402 LFDETTFYDKQWQATWQD 349
LFDETT YDKQWQA W++
Sbjct: 234 LFDETTLYDKQWQAAWKN 251
>pir||H71445 hypothetical protein - Arabidopsis thaliana
gi|2245119|emb|CAB10541.1| TRP-185 like protein
[Arabidopsis thaliana] gi|7268513|emb|CAB78764.1| TRP-185
like protein [Arabidopsis thaliana]
Length = 1493
Score = 57.4 bits (137), Expect = 5e-07
Identities = 48/139 (34%), Positives = 60/139 (42%), Gaps = 14/139 (10%)
Frame = +2
Query: 569 PLRRSASGRWNLFIHAHQGTMEVSKTTGFSLLLDSGLSWSHFLLLASASITASQSVLPFF 748
P + SASG+W L I AH G ++VSK+ T SQSV P F
Sbjct: 1354 PFKSSASGKWYLLIQAHHGIIDVSKS------------------------TESQSVFPSF 1389
Query: 749 RNCIKSHVPATHLGS---SKPPGIFNSSAAAAA--ADEADPFVPTEIFSGGD----STAV 901
NC +S VP HL S + +F SS + A A F+ + GG ST
Sbjct: 1390 SNCFRSQVPLIHLASWNLTTLSVVFISSPSTATFLAVAVSSFLTAGVDCGGSLTITSTGS 1449
Query: 902 AAESEAPA-----PLSEEA 943
A +E A PLSEEA
Sbjct: 1450 GASTETAAVGEVDPLSEEA 1468
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,180,388,942
Number of Sequences: 1393205
Number of extensions: 29138273
Number of successful extensions: 127167
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 98173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122514
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 78392734679
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
