KMC002406A_c02
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002406A_C02 KMC002406A_c02
gttgtttGACTTTTACCACACCCGGGTTGAATAAGATGCCTCAATAGTAGATACGAATGG
TTAAACCCAAAATAAAAAAACCCCAATTAAGAGCTTACCCAAACATACAATACAGTTTCA
CAGACACTAGAGAAAAATCCAGCATTGCATCTTGGCCAAGCACAAAAAAAACTATTTGGG
TCATTAAGCACTCTGAATAAGAAAAGGAATTGAAAGTACAAGGTCTAATTCATATTCATG
TCTAGAGCACTATATTAAGAGAAAGAAGGGGGTGGGGGAGAACTAGTGAACTACTTAACA
GCAATTCCAGTATTCAACTACTCTTTTTTGGAAGTGTTTGAGTTCTCAGTCCTGCCAAGT
TGCTTGCCATTGCTTGTCATAAAATGTAGTCTCATCGAACAGCTTCTTAAGATTTTCAAG
GTCCTCATTCTTTCGGATCAGAAGTACTCCTGCCACGGCTATGAATAGAAGAGTTTTGCA
AACGAAGTTGTTCGTTTGATCAACTAGACCTACTCCTGTCAAGCTATCAACCAGATATGC
CATAAAGAATCCTATCATTGCAGCGCGACCATTAAGACGTTCAGCTTCAGGGAGATGGAA
CCTTTTTATCCATGCCCACCAAGGTACGATGGAGGTGTCAAAAACCACAGGATTTTCATT
GCTGCTTGATTCTGGGTTATCCTGGAGCCACTTTCTCCTCCTTGCCTCAGCATCGATAAC
AGCATCCCAATCGGTGCTGCCATTTTTCCGGAACTGCATCAAGTCCCATGTGCCTGCAAC
CCATCTTGGGTCCTCAAAACCACCGGGAATCTTCAACTCCTCAGCTGCAGCAGCAGCAGC
AGATGAAGCAGACCCATTTGTCCCAACAGAGATTTTCTCCGGCGGCGATTCCACTGCAGT
TGCAGCTGAATCAGAAGCTCCTGCTCCATTGTCAGAAGAAGCCTTCCACTTCAAGGGAGA
AAGAGGAAGGTTTTTTGGCCTGAGAGTGAAGAAAAAATGGTTTTGGGTGAGATGGGGTTT
GGAGTTTGAGGAAGAAAGAGTGGCTGAGAAACGAGTCAGAGGGGAAAACGAAGCCATGGT
GGTTGACATGGTTTGCATTGTGTGTGTGTTGTGAGGTATCAGAGTTTAGAACATGGTGTG
TGGGAAGTGAAGTGAGGGTGAGGGTGAGGGTGAGGGTGGGTTTCTGTTTCTGGGGTTATC
CTCACCCActccttagccttggaaataatggcaagagcacaa
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002406A_C02 KMC002406A_c02
(1242 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199522.1| Lil3 protein; protein id: At5g47110.1 [Arabidop... 273 4e-72
pir||G71445 hypothetical protein - Arabidopsis thaliana gi|22451... 272 9e-72
gb|AAM63936.1| Lil3 protein [Arabidopsis thaliana] 272 9e-72
ref|NP_567532.1| Lil3 protein; protein id: At4g17600.1, supporte... 272 9e-72
pir||H71445 hypothetical protein - Arabidopsis thaliana gi|22451... 57 5e-07
>ref|NP_199522.1| Lil3 protein; protein id: At5g47110.1 [Arabidopsis thaliana]
gi|8978078|dbj|BAA98106.1| Lil3 protein [Arabidopsis
thaliana]
Length = 254
Score = 273 bits (698), Expect = 4e-72
Identities = 142/244 (58%), Positives = 170/244 (69%), Gaps = 10/244 (4%)
Frame = -1
Query: 1050 FSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGAS-----DSAATAVE- 889
FS +SSS P+L L K L + +ASSDNG + A+ AVE
Sbjct: 4 FSPPISSSLQNPNLIPKISTSLLSTKRFSLISVP-RASSDNGTTSPVVEIPKPASVAVEE 62
Query: 888 ----SPPEKISVGTNGSASSAAAAAAEELKIPGGFEDPRWVAGTWDLMQFRKNGSTDWDA 721
SP E S NG+ A ++ E I +++ +WV GTWDL QF K+G TDWD+
Sbjct: 63 VPVKSPAESSSASENGAVGGEATDSSTETVIK--YQNAKWVNGTWDLKQFEKDGKTDWDS 120
Query: 720 VIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEAERLNGRAAMIGFFM 541
VI +EA+RRKWL+DNPE++SN+ VVFDTSI+PWWAW+KR+HLPEAE LNGRAAMIGFFM
Sbjct: 121 VIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRAAMIGFFM 180
Query: 540 AYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKKLFDETTFYDKQWQA 361
AY VDSLTGVGLVDQ NF CKTLLF+AVAGVL IRKNEDL+ LK LFDETT YDKQWQA
Sbjct: 181 AYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDETTLYDKQWQA 240
Query: 360 TWQD 349
W++
Sbjct: 241 AWKE 244
>pir||G71445 hypothetical protein - Arabidopsis thaliana
gi|2245118|emb|CAB10540.1| hypothetical protein
[Arabidopsis thaliana] gi|7268512|emb|CAB78763.1|
hypothetical protein [Arabidopsis thaliana]
Length = 350
Score = 272 bits (695), Expect = 9e-72
Identities = 145/258 (56%), Positives = 176/258 (68%), Gaps = 15/258 (5%)
Frame = -1
Query: 1077 MASFSPLTRFSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGASDSAAT 898
MA FSP SSS P+ F L L + +ASSD+G+ S +AA
Sbjct: 1 MALFSP-----PISSSSLQNPNFIPKFSFSLLSSNRFSLLSVT-RASSDSGS-TSPTAAV 53
Query: 897 AVESP-PEKISVGTNGSASSAA-----------AAAAEELKIPGG---FEDPRWVAGTWD 763
+VE+P P ++ V ++ A A EE+K F+D RW+ GTWD
Sbjct: 54 SVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWD 113
Query: 762 LMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEA 583
L QF K+G TDWD+VI AEA+RRKWL++NPE++SN+ PV+FDTSI+PWWAWIKR+HLPEA
Sbjct: 114 LKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEA 173
Query: 582 ERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKK 403
E LNGRAAMIGFFMAY VDSLTGVGLVDQ NF CKTLLF+AVAGVL IRKNED++ LK
Sbjct: 174 ELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKN 233
Query: 402 LFDETTFYDKQWQATWQD 349
LFDETT YDKQWQA W++
Sbjct: 234 LFDETTLYDKQWQAAWKN 251
>gb|AAM63936.1| Lil3 protein [Arabidopsis thaliana]
Length = 262
Score = 272 bits (695), Expect = 9e-72
Identities = 145/258 (56%), Positives = 176/258 (68%), Gaps = 15/258 (5%)
Frame = -1
Query: 1077 MASFSPLTRFSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGASDSAAT 898
MA FSP SSS P+ F L L + +ASSD+G+ S +AA
Sbjct: 1 MALFSP-----PISSSSLQNPNFIPKFSFSLLSSNRFSLLSVT-RASSDSGS-TSPTAAV 53
Query: 897 AVESP-PEKISVGTNGSASSAA-----------AAAAEELKIPGG---FEDPRWVAGTWD 763
+VE+P P ++ V ++ A A EE+K F+D RW+ GTWD
Sbjct: 54 SVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVIKFQDARWINGTWD 113
Query: 762 LMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEA 583
L QF K+G TDWD+VI AEA+RRKWL++NPE++SN+ PV+FDTSI+PWWAWIKR+HLPEA
Sbjct: 114 LKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEA 173
Query: 582 ERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKK 403
E LNGRAAMIGFFMAY VDSLTGVGLVDQ NF CKTLLF+AVAGVL IRKNED++ LK
Sbjct: 174 ELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKN 233
Query: 402 LFDETTFYDKQWQATWQD 349
LFDETT YDKQWQA W++
Sbjct: 234 LFDETTLYDKQWQAAWKN 251
>ref|NP_567532.1| Lil3 protein; protein id: At4g17600.1, supported by cDNA: 29150.,
supported by cDNA: gi_14030672, supported by cDNA:
gi_18491100, supported by cDNA: gi_4741965 [Arabidopsis
thaliana] gi|25455770|pir||T52310 Lil3 protein [imported]
- Arabidopsis thaliana
gi|4741966|gb|AAD28780.1|AF134133_1 Lil3 protein
[Arabidopsis thaliana]
gi|14030673|gb|AAK53011.1|AF375427_1 AT4g17600/dl4835w
[Arabidopsis thaliana] gi|18491101|gb|AAL69517.1|
AT4g17600/dl4835w [Arabidopsis thaliana]
gi|22530970|gb|AAM96989.1| Lil3 protein [Arabidopsis
thaliana] gi|23198388|gb|AAN15721.1| Lil3 protein
[Arabidopsis thaliana] gi|23306350|gb|AAN17402.1| Lil3
protein [Arabidopsis thaliana] gi|25084208|gb|AAN72196.1|
Lil3 protein [Arabidopsis thaliana]
Length = 262
Score = 272 bits (695), Expect = 9e-72
Identities = 145/258 (56%), Positives = 176/258 (68%), Gaps = 15/258 (5%)
Frame = -1
Query: 1077 MASFSPLTRFSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGASDSAAT 898
MA FSP SSS P+ F L L + +ASSD+G+ S +AA
Sbjct: 1 MALFSP-----PISSSSLQNPNFIPKFSFSLLSSNRFSLLSVT-RASSDSGS-TSPTAAV 53
Query: 897 AVESP-PEKISVGTNGSASSAA-----------AAAAEELKIPGG---FEDPRWVAGTWD 763
+VE+P P ++ V ++ A A EE+K F+D RW+ GTWD
Sbjct: 54 SVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWD 113
Query: 762 LMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEA 583
L QF K+G TDWD+VI AEA+RRKWL++NPE++SN+ PV+FDTSI+PWWAWIKR+HLPEA
Sbjct: 114 LKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEA 173
Query: 582 ERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKK 403
E LNGRAAMIGFFMAY VDSLTGVGLVDQ NF CKTLLF+AVAGVL IRKNED++ LK
Sbjct: 174 ELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKN 233
Query: 402 LFDETTFYDKQWQATWQD 349
LFDETT YDKQWQA W++
Sbjct: 234 LFDETTLYDKQWQAAWKN 251
>pir||H71445 hypothetical protein - Arabidopsis thaliana
gi|2245119|emb|CAB10541.1| TRP-185 like protein
[Arabidopsis thaliana] gi|7268513|emb|CAB78764.1| TRP-185
like protein [Arabidopsis thaliana]
Length = 1493
Score = 57.4 bits (137), Expect = 5e-07
Identities = 48/139 (34%), Positives = 60/139 (42%), Gaps = 14/139 (10%)
Frame = +2
Query: 569 PLRRSASGRWNLFIHAHQGTMEVSKTTGFSLLLDSGLSWSHFLLLASASITASQSVLPFF 748
P + SASG+W L I AH G ++VSK+ T SQSV P F
Sbjct: 1354 PFKSSASGKWYLLIQAHHGIIDVSKS------------------------TESQSVFPSF 1389
Query: 749 RNCIKSHVPATHLGS---SKPPGIFNSSAAAAA--ADEADPFVPTEIFSGGD----STAV 901
NC +S VP HL S + +F SS + A A F+ + GG ST
Sbjct: 1390 SNCFRSQVPLIHLASWNLTTLSVVFISSPSTATFLAVAVSSFLTAGVDCGGSLTITSTGS 1449
Query: 902 AAESEAPA-----PLSEEA 943
A +E A PLSEEA
Sbjct: 1450 GASTETAAVGEVDPLSEEA 1468
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,180,388,942
Number of Sequences: 1393205
Number of extensions: 29138273
Number of successful extensions: 127167
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 98173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122514
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 78392734679
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
|
|
clone |
accession |
position |
| 1 |
MPD067e11_f |
AV774466 |
1 |
492 |
| 2 |
SPD035h06_f |
BP046822 |
8 |
609 |
| 3 |
MF040c05_f |
BP030379 |
8 |
557 |
| 4 |
MPD032c05_f |
AV772177 |
12 |
509 |
| 5 |
MF088g06_f |
BP032942 |
15 |
456 |
| 6 |
SPD008h02_f |
BP044667 |
16 |
560 |
| 7 |
MF082g10_f |
BP032644 |
17 |
525 |
| 8 |
SPD040c09_f |
BP047173 |
18 |
500 |
| 9 |
MF022a11_f |
BP029405 |
63 |
492 |
| 10 |
MR093h08_f |
BP083191 |
69 |
174 |
| 11 |
MPD020a08_f |
AV771359 |
69 |
220 |
| 12 |
MFB040g06_f |
BP036940 |
75 |
253 |
| 13 |
MF070d04_f |
BP032007 |
130 |
461 |
| 14 |
SPD086e06_f |
BP050873 |
130 |
634 |
| 15 |
MFB091a10_f |
BP040620 |
130 |
620 |
| 16 |
MFB015d04_f |
BP035022 |
130 |
690 |
| 17 |
SPD066g05_f |
BP049295 |
130 |
745 |
| 18 |
SPD047d12_f |
BP047745 |
130 |
704 |
| 19 |
MFB016a12_f |
BP035076 |
133 |
637 |
| 20 |
SPD055g06_f |
BP048407 |
159 |
661 |
| 21 |
MPD009d06_f |
AV770589 |
166 |
529 |
| 22 |
MWL060g09_f |
AV769632 |
184 |
711 |
| 23 |
MF024h09_f |
BP029556 |
184 |
421 |
| 24 |
MFB081d04_f |
BP039926 |
185 |
672 |
| 25 |
MF043e05_f |
BP030560 |
186 |
717 |
| 26 |
MFB011g04_f |
BP034740 |
191 |
714 |
| 27 |
MPD037e04_f |
AV772534 |
196 |
328 |
| 28 |
MFB062c05_f |
BP038491 |
199 |
720 |
| 29 |
SPD051e08_f |
BP048081 |
208 |
706 |
| 30 |
MF023d10_f |
BP029481 |
686 |
1230 |
| 31 |
MWM067e01_f |
AV765785 |
830 |
1264 |
|
Lotus japonicus
Kazusa DNA Research Institute