Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002405A_C01 KMC002405A_c01
(740 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197155.1| amylogenin; reversibly glycosylatable polypepti... 166 4e-40
emb|CAA77236.1| amylogenin [Triticum aestivum] 137 2e-31
emb|CAA77234.1| amylogenin [Oryza sativa (indica cultivar-group)] 132 4e-30
gb|AAL87194.1|AF480497_22 putative amylogenin [Oryza sativa (jap... 132 4e-30
emb|CAA09470.1| RGP2 protein [Oryza sativa (japonica cultivar-gr... 132 7e-30
>ref|NP_197155.1| amylogenin; reversibly glycosylatable polypeptide; protein id:
At5g16510.1, supported by cDNA: 7365., supported by
cDNA: gi_20268773, supported by cDNA: gi_21280928
[Arabidopsis thaliana] gi|9759135|dbj|BAB09620.1|
amylogenin; reversibly glycosylatable polypeptide
[Arabidopsis thaliana] gi|20268774|gb|AAM14090.1|
putative amylogenin; reversibly glycosylatable
polypeptide [Arabidopsis thaliana]
gi|21280929|gb|AAM45135.1| putative amylogenin;
reversibly glycosylatable polypeptide [Arabidopsis
thaliana] gi|21594813|gb|AAM66046.1| amylogenin
[Arabidopsis thaliana]
Length = 348
Score = 166 bits (419), Expect = 4e-40
Identities = 72/110 (65%), Positives = 90/110 (81%)
Frame = -1
Query: 740 EDIWCGMCVKVICDHLGLGVKSGLPYVWRTERGDAIESLKKEWEGVKLMEDVVPFFQSVR 561
ED+WCGMC+K I DHLG GVK+GLPYVWR ERGDA+ESL+K+WEG+KLME VPFF S++
Sbjct: 238 EDVWCGMCLKHISDHLGYGVKTGLPYVWRNERGDAVESLRKKWEGMKLMEKSVPFFDSLK 297
Query: 560 LPQSATTAEDCVVEMAKTVKENLGKVDPMFSHAAETMEEWVKLWKSVGSA 411
LP++A EDCV+E+AK VKE LG DP F+ AA+ M +WV+LW SV S+
Sbjct: 298 LPETALKVEDCVIELAKAVKEQLGSDDPAFTQAADAMVKWVQLWNSVNSS 347
>emb|CAA77236.1| amylogenin [Triticum aestivum]
Length = 348
Score = 137 bits (344), Expect = 2e-31
Identities = 65/111 (58%), Positives = 86/111 (76%), Gaps = 2/111 (1%)
Frame = -1
Query: 740 EDIWCGMCVKVICDHLGLGVKSGLPYVWRT--ERGDAIESLKKEWEGVKLMEDVVPFFQS 567
EDIW G+C KV+CD LG GVK+GLPYV R+ E G A+ESLK EWEGVK+M+DV+PFF+S
Sbjct: 236 EDIWNGLCAKVVCDSLGYGVKTGLPYVMRSDAEAGKALESLK-EWEGVKVMDDVLPFFES 294
Query: 566 VRLPQSATTAEDCVVEMAKTVKENLGKVDPMFSHAAETMEEWVKLWKSVGS 414
++L ++A T +DCV E+A VK+ L + +F+ AA+ MEEW KLWKS G+
Sbjct: 295 LKLSRTAVTVDDCVKELAGIVKQKLAPKNAIFAKAADVMEEWTKLWKSHGA 345
>emb|CAA77234.1| amylogenin [Oryza sativa (indica cultivar-group)]
Length = 347
Score = 132 bits (333), Expect = 4e-30
Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 2/111 (1%)
Frame = -1
Query: 740 EDIWCGMCVKVICDHLGLGVKSGLPYVWRT--ERGDAIESLKKEWEGVKLMEDVVPFFQS 567
ED+W G+C KV+CD L GVK+GLPYV R+ E G A+ESLK EWEGVK+M+ V+PFF+S
Sbjct: 235 EDVWNGLCAKVVCDRLRYGVKTGLPYVMRSDAEAGKALESLK-EWEGVKVMDVVLPFFES 293
Query: 566 VRLPQSATTAEDCVVEMAKTVKENLGKVDPMFSHAAETMEEWVKLWKSVGS 414
++L ++ T EDCV E+ VKE LG + +F+ AA+ MEEW KLWKS G+
Sbjct: 294 LKLSSTSVTVEDCVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKSHGA 344
>gb|AAL87194.1|AF480497_22 putative amylogenin [Oryza sativa (japonica cultivar-group)]
Length = 433
Score = 132 bits (333), Expect = 4e-30
Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 2/111 (1%)
Frame = -1
Query: 740 EDIWCGMCVKVICDHLGLGVKSGLPYVWRT--ERGDAIESLKKEWEGVKLMEDVVPFFQS 567
ED+W G+C KV+CD L GVK+GLPYV R+ E G A+ESLK EWEGVK+M+ V+PFF+S
Sbjct: 321 EDVWNGLCAKVVCDRLRYGVKTGLPYVMRSDAEAGKALESLK-EWEGVKVMDVVLPFFES 379
Query: 566 VRLPQSATTAEDCVVEMAKTVKENLGKVDPMFSHAAETMEEWVKLWKSVGS 414
++L ++ T EDCV E+ VKE LG + +F+ AA+ MEEW KLWKS G+
Sbjct: 380 LKLSSTSVTVEDCVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKSHGA 430
>emb|CAA09470.1| RGP2 protein [Oryza sativa (japonica cultivar-group)]
Length = 348
Score = 132 bits (331), Expect = 7e-30
Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 2/111 (1%)
Frame = -1
Query: 740 EDIWCGMCVKVICDHLGLGVKSGLPYVWRT--ERGDAIESLKKEWEGVKLMEDVVPFFQS 567
ED+W G+C KV+CD L GVK+GLPYV R+ E G A+ESLK EWEGVK+M+ V+PFF+S
Sbjct: 236 EDVWNGLCAKVVCDRLRYGVKTGLPYVIRSDAEAGKALESLK-EWEGVKVMDVVLPFFES 294
Query: 566 VRLPQSATTAEDCVVEMAKTVKENLGKVDPMFSHAAETMEEWVKLWKSVGS 414
++L ++ T EDCV E+ VKE LG + +F+ AA+ MEEW KLWKS G+
Sbjct: 295 LKLSSTSVTVEDCVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLWKSHGA 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 658,795,184
Number of Sequences: 1393205
Number of extensions: 14486897
Number of successful extensions: 38334
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 36915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38308
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
