Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002404A_C01 KMC002404A_c01
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567470.1| Expressed protein; protein id: At4g15545.1, sup... 202 3e-51
pir||B71420 hypothetical protein - Arabidopsis thaliana gi|22449... 160 2e-38
ref|NP_564000.1| unknown protein; protein id: At1g16520.1 [Arabi... 129 3e-29
gb|AAD34703.1|AC006341_31 ESTs gb|N38586 and gb|N38613 come from... 129 3e-29
ref|NP_176004.1| hypothetical protein; protein id: At1g56080.1 [... 122 4e-27
>ref|NP_567470.1| Expressed protein; protein id: At4g15545.1, supported by cDNA:
307., supported by cDNA: gi_14517355, supported by cDNA:
gi_15982812, supported by cDNA: gi_16323275 [Arabidopsis
thaliana] gi|14517356|gb|AAK62569.1| AT4g15540/dl3810w
[Arabidopsis thaliana] gi|15982813|gb|AAL09754.1|
AT4g15540/dl3810w [Arabidopsis thaliana]
gi|16323276|gb|AAL15372.1| AT4g15540/dl3810w
[Arabidopsis thaliana] gi|21592639|gb|AAM64588.1|
unknown [Arabidopsis thaliana]
gi|22531186|gb|AAM97097.1| expressed protein
[Arabidopsis thaliana] gi|23198008|gb|AAN15531.1|
expressed protein [Arabidopsis thaliana]
Length = 337
Score = 202 bits (515), Expect = 3e-51
Identities = 105/143 (73%), Positives = 118/143 (82%)
Frame = -1
Query: 677 SLLLASQSTTPRLTPXGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSS 498
SL L SQ+TTPRLTP GSPP LSAS +P TS+P+SPRRHS+SFAT+RGM DD S
Sbjct: 200 SLPLVSQTTTPRLTPPGSPPILSASGTPKTTSRPISPRRHSVSFATTRGMFDDTRS---- 255
Query: 497 MSSSDSGAGSQTGRTRVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREVTLQKAD 318
S S S GSQT RTRVDGKEFFRQVR+RLSYEQFGAFL NVK+LN+HKQTRE TL+KA+
Sbjct: 256 -SISISEPGSQTARTRVDGKEFFRQVRSRLSYEQFGAFLGNVKDLNAHKQTREETLRKAE 314
Query: 317 EIFGPENKDLYNIFEGLITRNVH 249
EIFG +N+DLY IFEGLITRN H
Sbjct: 315 EIFGGDNRDLYVIFEGLITRNAH 337
>pir||B71420 hypothetical protein - Arabidopsis thaliana
gi|2244910|emb|CAB10332.1| hypothetical protein
[Arabidopsis thaliana] gi|7268301|emb|CAB78596.1|
hypothetical protein [Arabidopsis thaliana]
Length = 576
Score = 160 bits (404), Expect = 2e-38
Identities = 84/114 (73%), Positives = 93/114 (80%)
Frame = -1
Query: 677 SLLLASQSTTPRLTPXGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSS 498
SL L SQ+TTPRLTP GSPP LSAS +P TS+P+SPRRHS+SFAT+RGM DD S
Sbjct: 450 SLPLVSQTTTPRLTPPGSPPILSASGTPKTTSRPISPRRHSVSFATTRGMFDDTRS---- 505
Query: 497 MSSSDSGAGSQTGRTRVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREV 336
S S S GSQT RTRVDGKEFFRQVR+RLSYEQFGAFL NVK+LN+HKQTREV
Sbjct: 506 -SISISEPGSQTARTRVDGKEFFRQVRSRLSYEQFGAFLGNVKDLNAHKQTREV 558
>ref|NP_564000.1| unknown protein; protein id: At1g16520.1 [Arabidopsis thaliana]
Length = 323
Score = 129 bits (325), Expect = 3e-29
Identities = 72/134 (53%), Positives = 93/134 (68%), Gaps = 1/134 (0%)
Frame = -1
Query: 650 TPRLTPXGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSSMSSSDSGAG 471
+PRLTP +P +S SVSP S SP+R S + + ++ +S SS ++S
Sbjct: 189 SPRLTPTATPKIISTSVSPRGYSAAGSPKRTSGAVSPTKATLWYPSSQQSSAANSPPRNR 248
Query: 470 SQTGRT-RVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFGPENK 294
+ RT R+DGKEFFRQ R+RLSYEQF +FLAN+KELN+ KQTRE TL+KADEIFG ENK
Sbjct: 249 TLPARTPRMDGKEFFRQARSRLSYEQFSSFLANIKELNAQKQTREETLRKADEIFGEENK 308
Query: 293 DLYNIFEGLITRNV 252
DLY F+GL+ RN+
Sbjct: 309 DLYLSFQGLLNRNM 322
>gb|AAD34703.1|AC006341_31 ESTs gb|N38586 and gb|N38613 come from this gene. [Arabidopsis
thaliana] gi|26452357|dbj|BAC43264.1| unknown protein
[Arabidopsis thaliana]
Length = 325
Score = 129 bits (325), Expect = 3e-29
Identities = 72/134 (53%), Positives = 93/134 (68%), Gaps = 1/134 (0%)
Frame = -1
Query: 650 TPRLTPXGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSSMSSSDSGAG 471
+PRLTP +P +S SVSP S SP+R S + + ++ +S SS ++S
Sbjct: 191 SPRLTPTATPKIISTSVSPRGYSAAGSPKRTSGAVSPTKATLWYPSSQQSSAANSPPRNR 250
Query: 470 SQTGRT-RVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFGPENK 294
+ RT R+DGKEFFRQ R+RLSYEQF +FLAN+KELN+ KQTRE TL+KADEIFG ENK
Sbjct: 251 TLPARTPRMDGKEFFRQARSRLSYEQFSSFLANIKELNAQKQTREETLRKADEIFGEENK 310
Query: 293 DLYNIFEGLITRNV 252
DLY F+GL+ RN+
Sbjct: 311 DLYLSFQGLLNRNM 324
>ref|NP_176004.1| hypothetical protein; protein id: At1g56080.1 [Arabidopsis
thaliana]
Length = 327
Score = 122 bits (307), Expect = 4e-27
Identities = 70/135 (51%), Positives = 90/135 (65%), Gaps = 5/135 (3%)
Frame = -1
Query: 650 TPRLTPXGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDR----TSVFSSMSSSD 483
+P TP G+P LS + SP S SP+ S + + + +D R TS SS+++S
Sbjct: 190 SPAFTPSGTPKILSTAASPRSYSAASSPKLFSGAASPTSSHYDIRMWSSTSQQSSVANSP 249
Query: 482 SGAGSQTGR-TRVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFG 306
+ S + R R+DGKEFFRQ R+RLSYEQF AFLAN+KELN+ KQ RE TLQKA+EIFG
Sbjct: 250 PRSHSVSARHPRIDGKEFFRQARSRLSYEQFSAFLANIKELNARKQGREETLQKAEEIFG 309
Query: 305 PENKDLYNIFEGLIT 261
EN DLY F+GL+T
Sbjct: 310 KENNDLYISFKGLLT 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,168,881
Number of Sequences: 1393205
Number of extensions: 13484329
Number of successful extensions: 44051
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 40878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43903
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
