Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002403A_C01 KMC002403A_c01
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN05508.1| Putative AMP-binding protein [Oryza sativa (japon... 144 2e-53
gb|AAN05507.1| Putative AMP-binding protein [Oryza sativa (japon... 143 4e-53
pir||G86338 protein F2D10.4 [imported] - Arabidopsis thaliana gi... 147 1e-52
gb|AAF79607.1|AC027665_8 F5M15.12 [Arabidopsis thaliana] 147 1e-52
ref|NP_564116.1| expressed protein; protein id: At1g20560.1, sup... 147 1e-52
>gb|AAN05508.1| Putative AMP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 561
Score = 144 bits (364), Expect(2) = 2e-53
Identities = 66/86 (76%), Positives = 78/86 (89%)
Frame = -3
Query: 662 QDAFKGGWFRTGDLGVKHPDGYIELKDRSKDIIISGGENISSIELEGVIFSHPAVLEAAV 483
++A +GGW RTGDLGV+HPDGYI+LKDR+KDIIISGGENISSIE+E V+F H AVL+AAV
Sbjct: 420 EEAMRGGWLRTGDLGVRHPDGYIQLKDRAKDIIISGGENISSIEVESVLFGHHAVLDAAV 479
Query: 482 VGRPDNYWGETPCAFVTLKEGYSATA 405
V RPD++WGET CAFVTLK+G SATA
Sbjct: 480 VARPDDHWGETACAFVTLKDGASATA 505
Score = 87.0 bits (214), Expect(2) = 2e-53
Identities = 41/55 (74%), Positives = 48/55 (86%)
Frame = -1
Query: 400 DIIQFCHKRLPRYMAPRTVVFADLPKTSTGKTQKYVLREKAKAMGSLSKKNTSRL 236
+II FC RLPRYMAPRTVVF DLPKTSTGKTQK++LREKA+AMGSL ++ S+L
Sbjct: 507 EIIAFCRARLPRYMAPRTVVFGDLPKTSTGKTQKFLLREKARAMGSLPMQSKSKL 561
>gb|AAN05507.1| Putative AMP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 548
Score = 143 bits (360), Expect(2) = 4e-53
Identities = 65/85 (76%), Positives = 76/85 (88%)
Frame = -3
Query: 662 QDAFKGGWFRTGDLGVKHPDGYIELKDRSKDIIISGGENISSIELEGVIFSHPAVLEAAV 483
+++ GGW +GDL V+HPDGYI+LKDR+KDIIISGGENISSIE+E VIFSHPAVLEAAV
Sbjct: 407 KESMAGGWLHSGDLAVRHPDGYIQLKDRAKDIIISGGENISSIEVESVIFSHPAVLEAAV 466
Query: 482 VGRPDNYWGETPCAFVTLKEGYSAT 408
V RPD+YWGETPCAFV LK+G +AT
Sbjct: 467 VARPDDYWGETPCAFVKLKDGANAT 491
Score = 87.4 bits (215), Expect(2) = 4e-53
Identities = 41/55 (74%), Positives = 48/55 (86%)
Frame = -1
Query: 400 DIIQFCHKRLPRYMAPRTVVFADLPKTSTGKTQKYVLREKAKAMGSLSKKNTSRL 236
+II FC +RLP YMAP+TVVF DLPKTSTGKTQK+VLREKA+AMGSL+K S+L
Sbjct: 494 EIISFCRERLPHYMAPKTVVFDDLPKTSTGKTQKFVLREKARAMGSLTKSANSKL 548
>pir||G86338 protein F2D10.4 [imported] - Arabidopsis thaliana
gi|8886956|gb|AAF80642.1|AC069251_35 F2D10.4
[Arabidopsis thaliana]
Length = 581
Score = 147 bits (370), Expect(2) = 1e-52
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = -3
Query: 662 QDAFKGGWFRTGDLGVKHPDGYIELKDRSKDIIISGGENISSIELEGVIFSHPAVLEAAV 483
++AFKGGWF +GDLGVKHPDGYIELKDRSKDIIISGGENISSIE+E +F+HP VLEAAV
Sbjct: 440 KEAFKGGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAV 499
Query: 482 VGRPDNYWGETPCAFVTLKEGYSATA 405
V RPD YWGET CAFV LK+G A+A
Sbjct: 500 VARPDEYWGETACAFVKLKDGSKASA 525
Score = 82.0 bits (201), Expect(2) = 1e-52
Identities = 38/56 (67%), Positives = 46/56 (81%)
Frame = -1
Query: 403 EDIIQFCHKRLPRYMAPRTVVFADLPKTSTGKTQKYVLREKAKAMGSLSKKNTSRL 236
E++I +C RLP YMAPR++VF DLPKTSTGK QK+VLR KAKA+ SLSKK S+L
Sbjct: 526 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 581
>gb|AAF79607.1|AC027665_8 F5M15.12 [Arabidopsis thaliana]
Length = 579
Score = 147 bits (370), Expect(2) = 1e-52
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = -3
Query: 662 QDAFKGGWFRTGDLGVKHPDGYIELKDRSKDIIISGGENISSIELEGVIFSHPAVLEAAV 483
++AFKGGWF +GDLGVKHPDGYIELKDRSKDIIISGGENISSIE+E +F+HP VLEAAV
Sbjct: 438 KEAFKGGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAV 497
Query: 482 VGRPDNYWGETPCAFVTLKEGYSATA 405
V RPD YWGET CAFV LK+G A+A
Sbjct: 498 VARPDEYWGETACAFVKLKDGSKASA 523
Score = 82.0 bits (201), Expect(2) = 1e-52
Identities = 38/56 (67%), Positives = 46/56 (81%)
Frame = -1
Query: 403 EDIIQFCHKRLPRYMAPRTVVFADLPKTSTGKTQKYVLREKAKAMGSLSKKNTSRL 236
E++I +C RLP YMAPR++VF DLPKTSTGK QK+VLR KAKA+ SLSKK S+L
Sbjct: 524 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 579
>ref|NP_564116.1| expressed protein; protein id: At1g20560.1, supported by cDNA:
gi_13937176, supported by cDNA: gi_18700259 [Arabidopsis
thaliana]
Length = 556
Score = 147 bits (370), Expect(2) = 1e-52
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = -3
Query: 662 QDAFKGGWFRTGDLGVKHPDGYIELKDRSKDIIISGGENISSIELEGVIFSHPAVLEAAV 483
++AFKGGWF +GDLGVKHPDGYIELKDRSKDIIISGGENISSIE+E +F+HP VLEAAV
Sbjct: 415 KEAFKGGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAV 474
Query: 482 VGRPDNYWGETPCAFVTLKEGYSATA 405
V RPD YWGET CAFV LK+G A+A
Sbjct: 475 VARPDEYWGETACAFVKLKDGSKASA 500
Score = 82.0 bits (201), Expect(2) = 1e-52
Identities = 38/56 (67%), Positives = 46/56 (81%)
Frame = -1
Query: 403 EDIIQFCHKRLPRYMAPRTVVFADLPKTSTGKTQKYVLREKAKAMGSLSKKNTSRL 236
E++I +C RLP YMAPR++VF DLPKTSTGK QK+VLR KAKA+ SLSKK S+L
Sbjct: 501 EELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKALVSLSKKGRSKL 556
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,359,032
Number of Sequences: 1393205
Number of extensions: 13224242
Number of successful extensions: 38128
Number of sequences better than 10.0: 1880
Number of HSP's better than 10.0 without gapping: 35114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37902
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
