Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002400A_C01 KMC002400A_c01
(1057 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172194.1| Ran-binding protein (atranbp1a); protein id: At... 306 4e-82
emb|CAA66045.1| atranbp1a [Arabidopsis thaliana] 305 6e-82
ref|NP_180567.1| Ran binding protein (AtRanBP1b); protein id: At... 298 1e-79
gb|AAM13098.1| Ran binding protein [Arabidopsis thaliana] 296 4e-79
emb|CAA66046.1| atranbp1b [Arabidopsis thaliana] 296 4e-79
>ref|NP_172194.1| Ran-binding protein (atranbp1a); protein id: At1g07140.1, supported
by cDNA: gi_13877580, supported by cDNA: gi_15294205,
supported by cDNA: gi_20453282, supported by cDNA:
gi_5106768 [Arabidopsis thaliana] gi|25406956|pir||D86206
hypothetical protein [imported] - Arabidopsis thaliana
gi|8954032|gb|AAF82206.1|AC067971_14 Identical to
atranbp1a from Arabidopsis thaliana gb|X97377. It
contains a RanBP1 domain PF|00638. ESTs gb|H76544,
gb|H76880, gb|AA389814, gb|AA712542, gb|T88156, gb|N65434
and gb|AA712288 come from this gene
gi|13877581|gb|AAK43868.1|AF370491_1 Unknown protein
[Arabidopsis thaliana]
gi|15294206|gb|AAK95280.1|AF410294_1 At1g07140/F10K1_27
[Arabidopsis thaliana] gi|20453283|gb|AAM19880.1|
At1g07140/F10K1_27 [Arabidopsis thaliana]
gi|25084245|gb|AAN72204.1| Unknown protein [Arabidopsis
thaliana]
Length = 228
Score = 306 bits (784), Expect = 4e-82
Identities = 159/230 (69%), Positives = 185/230 (80%), Gaps = 8/230 (3%)
Frame = -2
Query: 1032 MSSAEPEHRE-DEEAPAAGDDEDTGAQVAPIVQLEEVAVTTGEEDEDSIIDLKAKLYRFD 856
M++ EPEH DEE A +DEDTGAQVAPIV+LEEVAVTTGEEDED+++DLK+KLYRFD
Sbjct: 1 MATNEPEHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFD 60
Query: 855 KDGNQWKERGTGTVKFLKHKATGKVRLVMRQSKTLKICANHLISPTMSVQEHAGNEKSCV 676
KD NQWKERG GTVKFLKHK TGK+RLVMRQSKTLKICANH + MSVQEH GNEKSCV
Sbjct: 61 KDANQWKERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCV 120
Query: 675 WHARDFADGELKDELFCIRFPSIENCKSFMETFQEVAES--QKTEDKDASDAAAGLIEKL 502
WHARDFADGELKDELFCIRF SIENCK+FM+ F+EVAES +K E KDA+D AGL+EKL
Sbjct: 121 WHARDFADGELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAAD-TAGLLEKL 179
Query: 501 SV-----EEKADAEKKDEVKTESKAEEQEPASGEKSKADADKKDEEPASS 367
+V EEK +A+ + KTE KAEE++ + EKS +A K +E S+
Sbjct: 180 TVEETKTEEKTEAKAVETAKTEVKAEEKKESEAEKS-GEAKKTEESGPST 228
>emb|CAA66045.1| atranbp1a [Arabidopsis thaliana]
Length = 234
Score = 305 bits (782), Expect = 6e-82
Identities = 160/229 (69%), Positives = 183/229 (79%), Gaps = 8/229 (3%)
Frame = -2
Query: 1032 MSSAEPEHRE-DEEAPAAGDDEDTGAQVAPIVQLEEVAVTTGEEDEDSIIDLKAKLYRFD 856
M++ EPEH DEE A +DEDTGAQVAPIV+LEEVAVTTGEEDED+++DLK+KLYRFD
Sbjct: 1 MATNEPEHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFD 60
Query: 855 KDGNQWKERGTGTVKFLKHKATGKVRLVMRQSKTLKICANHLISPTMSVQEHAGNEKSCV 676
KD NQWKERG GTVKFLKHK TGK+RLVMRQSKTLKICANH + MSVQEH GNEKSCV
Sbjct: 61 KDANQWKERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCV 120
Query: 675 WHARDFADGELKDELFCIRFPSIENCKSFMETFQEVAES--QKTEDKDASDAAAGLIEKL 502
WHARDFADGELKDELFCIRF SIENCK+FM+ F+EVAES +K E KDA+D AGL+EKL
Sbjct: 121 WHARDFADGELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAAD-TAGLLEKL 179
Query: 501 SV-----EEKADAEKKDEVKTESKAEEQEPASGEKSKADADKKDEEPAS 370
+V EEK +A+ + KTE KAEE++ + EKS KK EE S
Sbjct: 180 TVEETKTEEKTEAKLVETAKTEVKAEEKKESEAEKS--GEAKKTEESGS 226
>ref|NP_180567.1| Ran binding protein (AtRanBP1b); protein id: At2g30060.1, supported
by cDNA: gi_20260399 [Arabidopsis thaliana]
gi|7484994|pir||T00592 GTP-binding protein RanBP1b
homolog T27E13.20 - Arabidopsis thaliana
gi|3150414|gb|AAC16966.1| Ran binding protein (AtRanBP1b)
[Arabidopsis thaliana] gi|20197228|gb|AAM14982.1| Ran
binding protein (AtRanBP1b) [Arabidopsis thaliana]
Length = 217
Score = 298 bits (762), Expect = 1e-79
Identities = 157/224 (70%), Positives = 180/224 (80%), Gaps = 3/224 (1%)
Frame = -2
Query: 1026 SAEPEHRE-DEEAPAAGDDEDTGAQVAPIVQLEEVAVTTGEEDEDSIIDLKAKLYRFDKD 850
S EPE DEE A +DEDTGAQVAPIV+LEEVAVTTGEEDED+I+DLK+KLYRFDKD
Sbjct: 5 SNEPERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKD 64
Query: 849 GNQWKERGTGTVKFLKHKATGKVRLVMRQSKTLKICANHLISPTMSVQEHAGNEKSCVWH 670
G+QWKERG GTVKFLKH+ +GK+RLVMRQSKTLKICANHL+ MSVQEHAGN+KSCVWH
Sbjct: 65 GSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWH 124
Query: 669 ARDFADGELKDELFCIRFPSIENCKSFMETFQEVAES--QKTEDKDASDAAAGLIEKLSV 496
ARDF+DGELKDELFCIRF S+ENCK+FM+ F+EVAES +K E KDASD AGL+EKL+V
Sbjct: 125 ARDFSDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASD-TAGLLEKLTV 183
Query: 495 EEKADAEKKDEVKTESKAEEQEPASGEKSKADADKKDEEPASSA 364
E EK+ E K KAEE +KS+A +KK EE SA
Sbjct: 184 E-----EKESEKKPVEKAEE-----NKKSEAVEEKKTEESVPSA 217
>gb|AAM13098.1| Ran binding protein [Arabidopsis thaliana]
Length = 217
Score = 296 bits (758), Expect = 4e-79
Identities = 156/224 (69%), Positives = 180/224 (79%), Gaps = 3/224 (1%)
Frame = -2
Query: 1026 SAEPEHRE-DEEAPAAGDDEDTGAQVAPIVQLEEVAVTTGEEDEDSIIDLKAKLYRFDKD 850
S EP+ DEE A +DEDTGAQVAPIV+LEEVAVTTGEEDED+I+DLK+KLYRFDKD
Sbjct: 5 SNEPKRENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKD 64
Query: 849 GNQWKERGTGTVKFLKHKATGKVRLVMRQSKTLKICANHLISPTMSVQEHAGNEKSCVWH 670
G+QWKERG GTVKFLKH+ +GK+RLVMRQSKTLKICANHL+ MSVQEHAGN+KSCVWH
Sbjct: 65 GSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWH 124
Query: 669 ARDFADGELKDELFCIRFPSIENCKSFMETFQEVAES--QKTEDKDASDAAAGLIEKLSV 496
ARDF+DGELKDELFCIRF S+ENCK+FM+ F+EVAES +K E KDASD AGL+EKL+V
Sbjct: 125 ARDFSDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASD-TAGLLEKLTV 183
Query: 495 EEKADAEKKDEVKTESKAEEQEPASGEKSKADADKKDEEPASSA 364
E EK+ E K KAEE +KS+A +KK EE SA
Sbjct: 184 E-----EKESEKKPVEKAEE-----NKKSEAVEEKKTEESVPSA 217
>emb|CAA66046.1| atranbp1b [Arabidopsis thaliana]
Length = 217
Score = 296 bits (758), Expect = 4e-79
Identities = 156/224 (69%), Positives = 180/224 (79%), Gaps = 3/224 (1%)
Frame = -2
Query: 1026 SAEPEHRE-DEEAPAAGDDEDTGAQVAPIVQLEEVAVTTGEEDEDSIIDLKAKLYRFDKD 850
S EPE DEE A +DEDTGAQVAPIV+LEEVAVTTGEEDED+I+DLK+KLYRFDKD
Sbjct: 5 SNEPERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKD 64
Query: 849 GNQWKERGTGTVKFLKHKATGKVRLVMRQSKTLKICANHLISPTMSVQEHAGNEKSCVWH 670
G+QWKERG GTVKF+KH+ +GK+RLVMRQSKTLKICANHL+ MSVQEHAGN+KSCVWH
Sbjct: 65 GSQWKERGAGTVKFVKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWH 124
Query: 669 ARDFADGELKDELFCIRFPSIENCKSFMETFQEVAES--QKTEDKDASDAAAGLIEKLSV 496
ARDF+DGELKDELFCIRF S+ENCK+FM+ F+EVAES +K E KDASD AGL+EKL+V
Sbjct: 125 ARDFSDGELKDELFCIRFGSVENCKAFMQKFKEVAESEEEKEESKDASD-TAGLLEKLTV 183
Query: 495 EEKADAEKKDEVKTESKAEEQEPASGEKSKADADKKDEEPASSA 364
E EK+ E K KAEE +KS+A +KK EE SA
Sbjct: 184 E-----EKESEKKPVEKAEE-----NKKSEAVEEKKTEESVPSA 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 895,855,319
Number of Sequences: 1393205
Number of extensions: 20468367
Number of successful extensions: 127434
Number of sequences better than 10.0: 994
Number of HSP's better than 10.0 without gapping: 85905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114133
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 62636524729
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
