Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002397A_C01 KMC002397A_c01
(771 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] 48 1e-04
ref|NP_192205.1| putative polyprotein of LTR transposon; protein... 48 1e-04
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana] 47 2e-04
gb|AAN41263.1| collagen XXVII proalpha 1 chain precursor; prepro... 47 4e-04
dbj|BAA78427.1| polyprotein [Arabidopsis thaliana] 46 5e-04
>dbj|BAA78424.1| polyprotein [Arabidopsis thaliana]
Length = 1330
Score = 48.1 bits (113), Expect = 1e-04
Identities = 35/131 (26%), Positives = 58/131 (43%), Gaps = 13/131 (9%)
Frame = -3
Query: 748 HSTTMGKPPAPRAKPLAPQTFSSSLTIPDASTISTPSSSRERRHHSHHRETLAPPPSTFD 569
H T +PP+ + Q SS+L +S+IS+PSSS + + A P T +
Sbjct: 647 HLDTSPRPPSSPSPLCTTQVSSSNLP---SSSISSPSSSEPTAPSHNGPQPTAQPHQTQN 703
Query: 568 LRRTAHLLEKLTPPLDSPHLPEQN-------------PSINLSFRQPSTETATSRLAPPS 428
+ +L P SP+ P QN P+ + S +P++ +++S PP
Sbjct: 704 SNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPL 763
Query: 427 SPARPSPENLQ 395
P P+P +Q
Sbjct: 764 PPVLPAPPIIQ 774
>ref|NP_192205.1| putative polyprotein of LTR transposon; protein id: At4g02960.1
[Arabidopsis thaliana] gi|7444420|pir||T01397 LTR gag/pol
polyprotein homolog T4I9.16 - Arabidopsis thaliana
gi|3924609|gb|AAC79110.1| putative polyprotein of LTR
transposon [Arabidopsis thaliana]
gi|7269781|emb|CAB77781.1| putative polyprotein of LTR
transposon [Arabidopsis thaliana]
Length = 1456
Score = 48.1 bits (113), Expect = 1e-04
Identities = 35/131 (26%), Positives = 58/131 (43%), Gaps = 13/131 (9%)
Frame = -3
Query: 748 HSTTMGKPPAPRAKPLAPQTFSSSLTIPDASTISTPSSSRERRHHSHHRETLAPPPSTFD 569
H T +PP+ + Q SS+L +S+IS+PSSS + + A P T +
Sbjct: 773 HLDTSPRPPSSPSPLCTTQVSSSNLP---SSSISSPSSSEPTAPSHNGPQPTAQPHQTQN 829
Query: 568 LRRTAHLLEKLTPPLDSPHLPEQN-------------PSINLSFRQPSTETATSRLAPPS 428
+ +L P SP+ P QN P+ + S +P++ +++S PP
Sbjct: 830 SNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPL 889
Query: 427 SPARPSPENLQ 395
P P+P +Q
Sbjct: 890 PPVLPAPPIIQ 900
>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 47.4 bits (111), Expect = 2e-04
Identities = 35/131 (26%), Positives = 58/131 (43%), Gaps = 13/131 (9%)
Frame = -3
Query: 748 HSTTMGKPPAPRAKPLAPQTFSSSLTIPDASTISTPSSSRERRHHSHHRETLAPPPSTFD 569
H T +PP+ + Q SS+L +S+IS+PSSS + + A P T +
Sbjct: 792 HLDTSPRPPSLPSPLCTTQVSSSNLP---SSSISSPSSSEPTAPSHNGPQPTAQPHQTQN 848
Query: 568 LRRTAHLLEKLTPPLDSPHLPEQN-------------PSINLSFRQPSTETATSRLAPPS 428
+ +L P SP+ P QN P+ + S +P++ +++S PP
Sbjct: 849 SNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPL 908
Query: 427 SPARPSPENLQ 395
P P+P +Q
Sbjct: 909 PPVLPAPPIIQ 919
>gb|AAN41263.1| collagen XXVII proalpha 1 chain precursor; preproprotein [Homo
sapiens]
Length = 1860
Score = 46.6 bits (109), Expect = 4e-04
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 15/132 (11%)
Frame = -3
Query: 757 PARHSTTMGKPPAPRAKPLAPQTFSSSLTIPDASTISTPSSSRERRHHSHHRETLAPPPS 578
P + + M +PP P +PL P T SS IP + +S + S T PPP
Sbjct: 425 PIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPF 484
Query: 577 TF---------DLRRTAHLLEKLTPPLDSPHLPEQNPSI------NLSFRQPSTETATSR 443
T R+ + PP P P++ ++P A+ +
Sbjct: 485 TALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKK 544
Query: 442 LAPPSSPARPSP 407
P SSP +P P
Sbjct: 545 AGPKSSPRKPVP 556
>dbj|BAA78427.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 46.2 bits (108), Expect = 5e-04
Identities = 34/131 (25%), Positives = 57/131 (42%), Gaps = 13/131 (9%)
Frame = -3
Query: 748 HSTTMGKPPAPRAKPLAPQTFSSSLTIPDASTISTPSSSRERRHHSHHRETLAPPPSTFD 569
H T +PP+ + Q SS+L +S+IS+PSSS + + P T +
Sbjct: 792 HLDTSPRPPSSPSPLCTTQVSSSNLP---SSSISSPSSSEPTAPSYNGPQPTTQPHQTQN 848
Query: 568 LRRTAHLLEKLTPPLDSPHLPEQN-------------PSINLSFRQPSTETATSRLAPPS 428
+ +L P SP+ P QN P+ + S +P++ +++S PP
Sbjct: 849 SNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPL 908
Query: 427 SPARPSPENLQ 395
P P+P +Q
Sbjct: 909 PPVLPAPPIIQ 919
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 725,372,335
Number of Sequences: 1393205
Number of extensions: 18150458
Number of successful extensions: 81968
Number of sequences better than 10.0: 513
Number of HSP's better than 10.0 without gapping: 67827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79410
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37815044670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
