Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002396A_C01 KMC002396A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF78583.1|AF239888_1 SAG101 [Arabidopsis thaliana] 70 2e-11
ref|NP_680168.1| expressed protein; protein id: At5g14930.2, sup... 67 1e-10
gb|AAF78582.1|AF239887_1 SAG101 [Arabidopsis thaliana] 67 1e-10
pir||T51438 hypothetical protein F2G14_50 - Arabidopsis thaliana... 67 1e-10
dbj|BAB30106.1| unnamed protein product [Mus musculus] 36 0.37
>gb|AAF78583.1|AF239888_1 SAG101 [Arabidopsis thaliana]
Length = 497
Score = 70.1 bits (170), Expect = 2e-11
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Frame = -3
Query: 558 FWAYVEEALLSCKELKVS-----KENEEALKKLLEFEEYVNGLLENYAVSPEIFLEKSSF 394
FWA VE++L+ +L + E E +KL+EFE YV ++ VSPEIFLE+SSF
Sbjct: 404 FWAEVEDSLIVINQLNTTVGMRDDEREVLTRKLVEFEGYVWEIITKREVSPEIFLEESSF 463
Query: 393 MRWWIEYKGLKGTSYS 346
M+WW EYK +KG + S
Sbjct: 464 MKWWKEYKKIKGFNSS 479
>ref|NP_680168.1| expressed protein; protein id: At5g14930.2, supported by cDNA:
gi_8699169 [Arabidopsis thaliana]
Length = 537
Score = 67.4 bits (163), Expect = 1e-10
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Frame = -3
Query: 558 FWAYVEEALLSCKELKVS-----KENEEALKKLLEFEEYVNGLLENYAVSPEIFLEKSSF 394
FWA VE++L+ +L + E +KL+EFE YV ++ VSPEIFLE+SSF
Sbjct: 444 FWAEVEDSLIVINQLNTTVGMRDDVREVLTRKLVEFEGYVWEIITKREVSPEIFLEESSF 503
Query: 393 MRWWIEYKGLKGTSYS 346
M+WW EYK +KG + S
Sbjct: 504 MKWWKEYKKIKGFNSS 519
>gb|AAF78582.1|AF239887_1 SAG101 [Arabidopsis thaliana]
Length = 497
Score = 67.4 bits (163), Expect = 1e-10
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Frame = -3
Query: 558 FWAYVEEALLSCKELKVS-----KENEEALKKLLEFEEYVNGLLENYAVSPEIFLEKSSF 394
FWA VE++L+ +L + E +KL+EFE YV ++ VSPEIFLE+SSF
Sbjct: 404 FWAEVEDSLIVINQLNTTVGMRDDVREVLTRKLVEFEGYVWEIITKREVSPEIFLEESSF 463
Query: 393 MRWWIEYKGLKGTSYS 346
M+WW EYK +KG + S
Sbjct: 464 MKWWKEYKKIKGFNSS 479
>pir||T51438 hypothetical protein F2G14_50 - Arabidopsis thaliana (fragment)
gi|9755660|emb|CAC01812.1| putative protein (fragment)
[Arabidopsis thaliana]
Length = 545
Score = 67.4 bits (163), Expect = 1e-10
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Frame = -3
Query: 558 FWAYVEEALLSCKELKVS-----KENEEALKKLLEFEEYVNGLLENYAVSPEIFLEKSSF 394
FWA VE++L+ +L + E +KL+EFE YV ++ VSPEIFLE+SSF
Sbjct: 443 FWAEVEDSLIVINQLNTTVGMRDDVREVLTRKLVEFEGYVWEIITKREVSPEIFLEESSF 502
Query: 393 MRWWIEYKGLKGTSYS 346
M+WW EYK +KG + S
Sbjct: 503 MKWWKEYKKIKGFNSS 518
>dbj|BAB30106.1| unnamed protein product [Mus musculus]
Length = 220
Score = 35.8 bits (81), Expect = 0.37
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 4/64 (6%)
Frame = -3
Query: 504 KENEEALKKLLEFEEYVNGLLENYAV----SPEIFLEKSSFMRWWIEYKGLKGTSYSSPL 337
+E EEA+K+ EFE L+ + + ++FLEK S +W EYK + ++ +
Sbjct: 93 EEVEEAMKEKWEFERQQEASLKEMRIQINEAEKLFLEKLSEKEYWEEYKNVGSAQHAQLI 152
Query: 336 VSYE 325
VS +
Sbjct: 153 VSLQ 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,366,172
Number of Sequences: 1393205
Number of extensions: 9539033
Number of successful extensions: 26079
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26035
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
