Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002393A_C01 KMC002393A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188026.1| oligouridylate binding protein (UBP1), putative... 73 1e-16
gb|AAM65229.1| oligouridylate binding protein, putative [Arabido... 71 5e-16
emb|CAB75429.1| oligouridylate binding protein [Nicotiana plumba... 70 3e-14
pir||C86310 protein F1L3.2 [imported] - Arabidopsis thaliana gi|... 78 9e-14
ref|NP_564018.1| oligouridylate binding protein (UBP1), putative... 78 9e-14
>ref|NP_188026.1| oligouridylate binding protein (UBP1), putative; protein id:
At3g14100.1, supported by cDNA: 37712. [Arabidopsis
thaliana] gi|9294635|dbj|BAB02974.1| RNA binding protein
nucleolysin; oligouridylate binding protein [Arabidopsis
thaliana] gi|22655004|gb|AAM98093.1| AT3g14100/MAG2_5
[Arabidopsis thaliana] gi|28416511|gb|AAO42786.1|
AT3g14100/MAG2_5 [Arabidopsis thaliana]
Length = 427
Score = 73.2 bits (178), Expect(2) = 1e-16
Identities = 43/71 (60%), Positives = 52/71 (72%)
Frame = -2
Query: 564 CSWGSKPTPPGAASSPLPLPPPSFAPVPAGFSLASLAAYERQMALSRMNGAHAALLQQQG 385
CSWG+KPTPPG AS+ PLPPP+ APVP G S A L YERQ+ALS+M + AL+ QQG
Sbjct: 335 CSWGNKPTPPGTASN--PLPPPAPAPVP-GLSAADLLNYERQLALSKMASVN-ALMHQQG 390
Query: 384 YQNAAKQAAHG 352
Q+ +Q AHG
Sbjct: 391 -QHPLRQ-AHG 399
Score = 34.7 bits (78), Expect(2) = 1e-16
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 365 RQPMGMGALGAAA--YDTGFQGVGTTQHLMYY 276
RQ G+ A GA A YD GFQ V Q LMYY
Sbjct: 395 RQAHGINAAGATAAMYDGGFQNVAAAQQLMYY 426
>gb|AAM65229.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
Length = 427
Score = 70.9 bits (172), Expect(2) = 5e-16
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = -2
Query: 564 CSWGSKPTPPGAASSPLPLPPPSFAPVPAGFSLASLAAYERQMALSRMNGAHAALLQQQG 385
CSWG+KPTPPG AS+ PLPPP+ APVP G S A L YERQ+ALS+M + AL+ QG
Sbjct: 335 CSWGNKPTPPGTASN--PLPPPAPAPVP-GLSAADLLNYERQLALSKMASVN-ALMHPQG 390
Query: 384 YQNAAKQAAHG 352
Q+ +Q AHG
Sbjct: 391 -QHPLRQ-AHG 399
Score = 34.7 bits (78), Expect(2) = 5e-16
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 365 RQPMGMGALGAAA--YDTGFQGVGTTQHLMYY 276
RQ G+ A GA A YD GFQ V Q LMYY
Sbjct: 395 RQAHGINAAGATAAMYDGGFQNVAAAQQLMYY 426
>emb|CAB75429.1| oligouridylate binding protein [Nicotiana plumbaginifolia]
Length = 406
Score = 70.1 bits (170), Expect(2) = 3e-14
Identities = 36/65 (55%), Positives = 47/65 (71%)
Frame = -2
Query: 564 CSWGSKPTPPGAASSPLPLPPPSFAPVPAGFSLASLAAYERQMALSRMNGAHAALLQQQG 385
CSWGSKPTPPG++S+ PLPPP+ +P G S LAAY+RQ+AL++M GA A +Q QG
Sbjct: 324 CSWGSKPTPPGSSSN--PLPPPAIGQIP-GLSAMDLAAYQRQLALAKMAGAQ-AFMQPQG 379
Query: 384 YQNAA 370
+ A
Sbjct: 380 QRIGA 384
Score = 29.6 bits (65), Expect(2) = 3e-14
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 362 QPMG--MGALGAAAYDTGFQGVGTTQHLMYY 276
QP G +GA G YD G+ G+ +TQ MY+
Sbjct: 376 QPQGQRIGAPGQGIYDGGYGGIASTQPPMYF 406
>pir||C86310 protein F1L3.2 [imported] - Arabidopsis thaliana
gi|8778484|gb|AAF79492.1|AC022492_36 F1L3.2 [Arabidopsis
thaliana]
Length = 575
Score = 77.8 bits (190), Expect = 9e-14
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = -2
Query: 564 CSWGSKPTPPGAASSPLPLPPPSFAPVPAGFSLASLAAYERQMALSRMNGAHAALLQQQG 385
CSWGSKPTP G AS+ PLPPP+ AP+P GFS + L AYERQ+A+S+M G + + QG
Sbjct: 486 CSWGSKPTPAGTASN--PLPPPAPAPIP-GFSASDLLAYERQLAMSKMAGMNPMMHHPQG 542
Query: 384 YQNAAKQAAHG 352
Q+A KQAA G
Sbjct: 543 -QHAFKQAAMG 552
>ref|NP_564018.1| oligouridylate binding protein (UBP1), putative; protein id:
At1g17370.1, supported by cDNA: 17210. [Arabidopsis
thaliana] gi|9665134|gb|AAF97318.1|AC007843_21 Putative
RNA binding protein [Arabidopsis thaliana]
gi|21553830|gb|AAM62923.1| oligouridylate binding
protein, putative [Arabidopsis thaliana]
Length = 419
Score = 77.8 bits (190), Expect = 9e-14
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = -2
Query: 564 CSWGSKPTPPGAASSPLPLPPPSFAPVPAGFSLASLAAYERQMALSRMNGAHAALLQQQG 385
CSWGSKPTP G AS+ PLPPP+ AP+P GFS + L AYERQ+A+S+M G + + QG
Sbjct: 330 CSWGSKPTPAGTASN--PLPPPAPAPIP-GFSASDLLAYERQLAMSKMAGMNPMMHHPQG 386
Query: 384 YQNAAKQAAHG 352
Q+A KQAA G
Sbjct: 387 -QHAFKQAAMG 396
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,910,750
Number of Sequences: 1393205
Number of extensions: 12954695
Number of successful extensions: 80299
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 55254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76669
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
