Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002391A_C01 KMC002391A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568922.1| imidazoleglycerol-phosphate synthase subunit H ... 51 9e-06
dbj|BAB08237.1| amidotransferase hisH-like protein [Arabidopsis ... 51 9e-06
emb|CAC81978.1| SNO protein [Suberites domuncula] 35 0.49
emb|CAC81976.1| SNO protein [Suberites domuncula] 35 0.49
gb|ZP_00070556.1| hypothetical protein [Oenococcus oeni MCW] 35 0.64
>ref|NP_568922.1| imidazoleglycerol-phosphate synthase subunit H - like; protein id:
At5g60540.1, supported by cDNA: 39485. [Arabidopsis
thaliana] gi|21593486|gb|AAM65453.1|
imidazoleglycerol-phosphate synthase subunit H-like
[Arabidopsis thaliana] gi|26449721|dbj|BAC41984.1|
putative imidazoleglycerol-phosphate synthase subunit H
[Arabidopsis thaliana] gi|28950813|gb|AAO63330.1|
At5g60540 [Arabidopsis thaliana]
Length = 255
Score = 50.8 bits (120), Expect = 9e-06
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Frame = -3
Query: 426 SFNPELTADTRWHSYFLKMA---NVNGEEASSNLVPAEASTNVNQRPLN-DLPIFQ 271
+F+PELTADTRWHSYF+KM +SS + + T+ P DLPIFQ
Sbjct: 200 AFHPELTADTRWHSYFIKMTKEIEQGASSSSSKTIVSVGETSAGPEPAKPDLPIFQ 255
>dbj|BAB08237.1| amidotransferase hisH-like protein [Arabidopsis thaliana]
Length = 240
Score = 50.8 bits (120), Expect = 9e-06
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Frame = -3
Query: 426 SFNPELTADTRWHSYFLKMA---NVNGEEASSNLVPAEASTNVNQRPLN-DLPIFQ 271
+F+PELTADTRWHSYF+KM +SS + + T+ P DLPIFQ
Sbjct: 185 AFHPELTADTRWHSYFIKMTKEIEQGASSSSSKTIVSVGETSAGPEPAKPDLPIFQ 240
>emb|CAC81978.1| SNO protein [Suberites domuncula]
Length = 233
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = -3
Query: 426 SFNPELTADTRWHSYFL 376
SF+PELT+D RWHSYF+
Sbjct: 206 SFHPELTSDFRWHSYFV 222
>emb|CAC81976.1| SNO protein [Suberites domuncula]
Length = 233
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = -3
Query: 426 SFNPELTADTRWHSYFL 376
SF+PELT+D RWHSYF+
Sbjct: 206 SFHPELTSDFRWHSYFV 222
>gb|ZP_00070556.1| hypothetical protein [Oenococcus oeni MCW]
Length = 191
Score = 34.7 bits (78), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -3
Query: 426 SFNPELTADTRWHSYFLKMANVN 358
+F+PELT DTR+H YF+K+ N
Sbjct: 168 AFHPELTGDTRFHEYFVKITKEN 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,554,031
Number of Sequences: 1393205
Number of extensions: 7822351
Number of successful extensions: 14586
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14584
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
