Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002388A_C01 KMC002388A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 40 0.020
ref|NP_647974.1| CG5146-PA [Drosophila melanogaster] gi|23094104... 39 0.027
ref|NP_788671.1| CG10851-PG [Drosophila melanogaster] gi|1786194... 38 0.059
ref|NP_788667.1| CG10851-PE [Drosophila melanogaster] gi|2317119... 38 0.059
ref|NP_788665.1| CG10851-PA [Drosophila melanogaster] gi|2857169... 38 0.059
>pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Crithidia
oncopelti mitochondrion gi|12882|emb|CAA39492.1| NADH
dehydrogenase subunit 5 [Crithidia oncopelti]
Length = 590
Score = 39.7 bits (91), Expect = 0.020
Identities = 34/133 (25%), Positives = 59/133 (43%), Gaps = 8/133 (6%)
Frame = -3
Query: 404 LFFAACFLLLRASILCILHWCFLHLNVVMKM*CCFAC---LLCSLLVVTW----DHSFSV 246
++F C L + +L+ C L C F C LLC+L++V++ + F
Sbjct: 362 IYFCGCVLARMLLVFALLNSCSLWFL------CGFYCKDLLLCTLMLVSFHFILEFLFVC 415
Query: 245 SYELEWTVCW-FSVIVLSPDLFFCFCPL*LSTFVFLMLILLLLAL*SYSRVDLRCCVLYW 69
+ + +TV + + ++ +F CFC L+ +FL+ D CC++Y
Sbjct: 416 IFFIFFTVIYNYFLLFFLCFVFKCFC---LADCLFLLF-------------DFECCLIYC 459
Query: 68 FLGLSFCSWFPFY 30
FLGL C F+
Sbjct: 460 FLGLYMCFILIFF 472
>ref|NP_647974.1| CG5146-PA [Drosophila melanogaster] gi|23094104|gb|AAF50767.2|
CG5146-PA [Drosophila melanogaster]
Length = 1929
Score = 39.3 bits (90), Expect = 0.027
Identities = 28/87 (32%), Positives = 39/87 (44%)
Frame = +2
Query: 29 NRKGTKSKKRAQGTSTKHST*DPHESRITRPAKVKLTLKTQRY*ATGGRNKKRDQGTKQS 208
+R ++S+ R +G+ TK T P R+ P +V K A GG K R S
Sbjct: 1265 SRSISRSRARRRGSRTKSRTPSPRRRRLPSPRRVSRYAKRIGGGAVGGTRKGR------S 1318
Query: 209 H*TSIQSTPIRKRLRMNGPRLPPAGSK 289
H S+ + R R RLPPAG +
Sbjct: 1319 HSRSLTRSRTRSRSPSRRRRLPPAGHR 1345
>ref|NP_788671.1| CG10851-PG [Drosophila melanogaster] gi|17861940|gb|AAL39447.1|
HL03687p [Drosophila melanogaster]
gi|23171197|gb|AAN13579.1|AE003701_24 CG10851-PG
[Drosophila melanogaster] gi|25010013|gb|AAN71172.1|
GH12433p [Drosophila melanogaster]
gi|25012830|gb|AAN71505.1| RH01580p [Drosophila
melanogaster] gi|28416383|gb|AAO42664.1| GH08123p
[Drosophila melanogaster]
Length = 216
Score = 38.1 bits (87), Expect = 0.059
Identities = 27/134 (20%), Positives = 56/134 (41%)
Frame = +1
Query: 43 QEQKESPRNQYKTQHLRSTRE*DHKASKSKINIKNTKVLSYRGQKQKKRSGDKTITLNQH 222
+ + S R++ +++ +R H SKS+ K+ S K RS ++ +
Sbjct: 68 RSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSR 127
Query: 223 TVHSNS*ETENEWSQVTTSREQSKQAKQHHIFMTTLRCKKHQCRIHRIEARSSRKHAAKN 402
V + ++ + + RE+ +++ + R + IHR R +A+N
Sbjct: 128 DVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSRSRSKSIHRDSRSRDRSASAEN 187
Query: 403 RDQE*IQISSASPK 444
+ + + SASPK
Sbjct: 188 KSRSRSRSRSASPK 201
>ref|NP_788667.1| CG10851-PE [Drosophila melanogaster]
gi|23171194|gb|AAN13576.1|AE003701_20 CG10851-PE
[Drosophila melanogaster]
Length = 346
Score = 38.1 bits (87), Expect = 0.059
Identities = 27/134 (20%), Positives = 56/134 (41%)
Frame = +1
Query: 43 QEQKESPRNQYKTQHLRSTRE*DHKASKSKINIKNTKVLSYRGQKQKKRSGDKTITLNQH 222
+ + S R++ +++ +R H SKS+ K+ S K RS ++ +
Sbjct: 198 RSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSR 257
Query: 223 TVHSNS*ETENEWSQVTTSREQSKQAKQHHIFMTTLRCKKHQCRIHRIEARSSRKHAAKN 402
V + ++ + + RE+ +++ + R + IHR R +A+N
Sbjct: 258 DVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSRSRSKSIHRDSRSRDRSASAEN 317
Query: 403 RDQE*IQISSASPK 444
+ + + SASPK
Sbjct: 318 KSRSRSRSRSASPK 331
>ref|NP_788665.1| CG10851-PA [Drosophila melanogaster] gi|28571699|ref|NP_788666.1|
CG10851-PC [Drosophila melanogaster]
gi|21064205|gb|AAM29332.1| AT29232p [Drosophila
melanogaster] gi|23171192|gb|AAF54969.2| CG10851-PA
[Drosophila melanogaster]
gi|23171193|gb|AAN13575.1|AE003701_19 CG10851-PC
[Drosophila melanogaster] gi|25012274|gb|AAN71250.1|
LD30815p [Drosophila melanogaster]
gi|27820026|gb|AAO25044.1| GM10155p [Drosophila
melanogaster]
Length = 350
Score = 38.1 bits (87), Expect = 0.059
Identities = 27/134 (20%), Positives = 56/134 (41%)
Frame = +1
Query: 43 QEQKESPRNQYKTQHLRSTRE*DHKASKSKINIKNTKVLSYRGQKQKKRSGDKTITLNQH 222
+ + S R++ +++ +R H SKS+ K+ S K RS ++ +
Sbjct: 202 RSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSR 261
Query: 223 TVHSNS*ETENEWSQVTTSREQSKQAKQHHIFMTTLRCKKHQCRIHRIEARSSRKHAAKN 402
V + ++ + + RE+ +++ + R + IHR R +A+N
Sbjct: 262 DVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSRSRSKSIHRDSRSRDRSASAEN 321
Query: 403 RDQE*IQISSASPK 444
+ + + SASPK
Sbjct: 322 KSRSRSRSRSASPK 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,686,561
Number of Sequences: 1393205
Number of extensions: 9128525
Number of successful extensions: 27677
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 26616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27605
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
