Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002387A_C02 KMC002387A_c02
(1156 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC64606.1| Tic22 [Pisum sativum] 397 e-109
ref|NP_195061.1| Tic22 -like protein; protein id: At4g33350.1 [A... 322 9e-87
dbj|BAC55716.1| putative Tic22 [Oryza sativa (japonica cultivar-... 146 7e-34
ref|NP_189013.1| Tic22, putative; protein id: At3g23710.1 [Arabi... 145 2e-33
dbj|BAB01848.1| contains similarity to unknown protein~gb|AAC646... 140 4e-32
>gb|AAC64606.1| Tic22 [Pisum sativum]
Length = 252
Score = 397 bits (1020), Expect = e-109
Identities = 199/248 (80%), Positives = 222/248 (89%)
Frame = -3
Query: 1154 PLLSFSTFIHQHCLHLATRFDETKRLAGTLVQSHVNPFFRAKHALAATLTSHHVAKSLAG 975
PLLSFS FI+ H HLATR +ETKRLAGTL+QSH R K A AATLT +HVAKSLAG
Sbjct: 9 PLLSFSRFINHHSNHLATRLEETKRLAGTLIQSHT----RTKPAFAATLTPNHVAKSLAG 64
Query: 974 TAVYTVSNSNNEFVLISDADAAKSXGLLCFRQEDAEAFLAQVRSRKRELRGNARVVPITL 795
T+VYTVSNS+NEFVL+SDA+ AKS GLLCFRQEDAEAFLAQVRSRK+E RG A+VVPITL
Sbjct: 65 TSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVRSRKKEFRGGAKVVPITL 124
Query: 794 DQVYMLKVEGIAFRFLPDPIQIKNAMELRPANKEGFDGVPVFQSDLLVVKRKNKRYCPVY 615
DQVYMLKVEGIAFRFLPDP+QIKNA+ELR AN+ FDGVPVFQSDLLVVK+KNKRYCPVY
Sbjct: 125 DQVYMLKVEGIAFRFLPDPVQIKNALELRAANRGSFDGVPVFQSDLLVVKKKNKRYCPVY 184
Query: 614 FSKEDIEQELSKVSRASKGAGLSQHIMVGSFEDVLRKMEMSEGNSGWEDLIFIPPGKSHS 435
FSKED+E ELSKVSR+SKG G+SQHIMVGSFEDVL+KME+SE +SGWEDL+FIPPGK HS
Sbjct: 185 FSKEDLEYELSKVSRSSKGVGVSQHIMVGSFEDVLKKMELSEKSSGWEDLVFIPPGKKHS 244
Query: 434 QHIQEINA 411
QH+QE+ A
Sbjct: 245 QHMQEVIA 252
>ref|NP_195061.1| Tic22 -like protein; protein id: At4g33350.1 [Arabidopsis thaliana]
gi|7488374|pir||T05986 Tic22 protein homolog F17M5.110 -
Arabidopsis thaliana gi|4490302|emb|CAB38793.1|
Tic22-like protein [Arabidopsis thaliana]
gi|7270283|emb|CAB80052.1| Tic22-like protein
[Arabidopsis thaliana] gi|26452624|dbj|BAC43395.1| Tic22
like protein [Arabidopsis thaliana]
gi|28973025|gb|AAO63837.1| putative Tic22 protein
[Arabidopsis thaliana]
Length = 268
Score = 322 bits (824), Expect = 9e-87
Identities = 170/260 (65%), Positives = 204/260 (78%), Gaps = 14/260 (5%)
Frame = -3
Query: 1154 PLLSFSTFIHQHCLH----LATRFDETKRLAGTLVQSHVN-----PFFRAKHALAAT--- 1011
P LSFS+FIH C L+ R ++TKR A TL + PF + + T
Sbjct: 9 PFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLPTPPPFASVSQSKSGTPTT 68
Query: 1010 -LTSHHVAKSLAGTAVYTVSNSNNEFVLISDADAAKSXGLLCFRQEDAEAFLAQVRSRKR 834
L+ VAK+LAGT+V+TVSN+NNEFVLISD KS GLLCFRQEDAEAFLAQ R R+R
Sbjct: 69 TLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLAQARLRRR 128
Query: 833 ELRGNARVVPITLDQVYMLKVEGIAFRFLPDPIQIKNAMELRPA-NKEGFDGVPVFQSDL 657
EL+ NA+VVPITLDQVY+LKVEGI+FRFLPDPIQIKNA+EL+ + NK GFDGVPVFQS+L
Sbjct: 129 ELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFDGVPVFQSEL 188
Query: 656 LVVKRKNKRYCPVYFSKEDIEQELSKVSRASKGAGLSQHIMVGSFEDVLRKMEMSEGNSG 477
LVV++KN+RYCPVYFSKEDIE+ELSK +RAS+G Q IMVGS EDVLRKMEMSE NSG
Sbjct: 189 LVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMVGSLEDVLRKMEMSEKNSG 245
Query: 476 WEDLIFIPPGKSHSQHIQEI 417
WED+IFIPPG+S++QH+Q++
Sbjct: 246 WEDVIFIPPGRSYAQHMQDL 265
>dbj|BAC55716.1| putative Tic22 [Oryza sativa (japonica cultivar-group)]
Length = 292
Score = 146 bits (368), Expect = 7e-34
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 20/216 (9%)
Frame = -3
Query: 1034 AKHALAATLTSHHVAKSLAGTAVYTVSNSNNEFVLISDADAA-------------KSXGL 894
A A A+ L + + LAG VY ++NS+ EFVL+S A + GL
Sbjct: 67 ASAASASALPVAEIEERLAGVPVYALANSSQEFVLVSSARGGGGGGGGARAAVPPPALGL 126
Query: 893 LCFRQEDAEAFLAQVRSRKRELRGNARVVPITLDQVYMLKVEGIAFRFLPDPIQIKNAME 714
LCFR+EDA+A LAQ+ ++ + VVP+ L++V LK +G+AFRF+PD Q+ NAM+
Sbjct: 127 LCFRREDADALLAQMDG---DMAAGSTVVPVALNKVIQLKSDGVAFRFVPDSSQVANAMK 183
Query: 713 LRPAN----KEGFDGVPVFQSDLLVVKRKNKRYCPVYFSKEDIEQELSKVSRASK---GA 555
L +GF GVPVFQS LV+ NKRY PV+F KED++ L + SR + A
Sbjct: 184 LMENEGQYVNDGFPGVPVFQSRSLVLMSDNKRYRPVFFRKEDLDNSLHRASRDQQKPNPA 243
Query: 554 GLSQHIMVGSFEDVLRKMEMSEGNSGWEDLIFIPPG 447
I V S E++++ M+ S +S W+D +FIPPG
Sbjct: 244 VKMGDIQVSSLENIIKSMKDS-SSSKWDDAVFIPPG 278
>ref|NP_189013.1| Tic22, putative; protein id: At3g23710.1 [Arabidopsis thaliana]
Length = 313
Score = 145 bits (365), Expect = 2e-33
Identities = 80/195 (41%), Positives = 120/195 (61%), Gaps = 7/195 (3%)
Frame = -3
Query: 1010 LTSHHVAKSLAGTAVYTVSNSNNEFVLISDADAAKSXGLLCFRQEDAEAFLAQVRSRKRE 831
L++ + + LAG VY +SNSN EFVL+S + KS GLL ++EDAE L +++S
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169
Query: 830 LR-GNARVVPITLDQVYMLKVEGIAFRFLPDPIQIKNAMELRPA---NKEGFDGVPVFQS 663
+R ++VV + L +V+ LKV G+AFR +P+ Q+KNA++ R + + F GVPVFQS
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 229
Query: 662 DLLVVKRKNKRYCPVYFSKEDIEQELSKVSRAS---KGAGLSQHIMVGSFEDVLRKMEMS 492
L+++ +N Y PV+F KED+E+ L + S A I V FED+++ M S
Sbjct: 230 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRES 289
Query: 491 EGNSGWEDLIFIPPG 447
S W+D++FIPPG
Sbjct: 290 T-TSNWDDIVFIPPG 303
>dbj|BAB01848.1| contains similarity to unknown protein~gb|AAC64606.1~gene_id:MYM9.5
[Arabidopsis thaliana]
Length = 320
Score = 140 bits (353), Expect = 4e-32
Identities = 79/202 (39%), Positives = 119/202 (58%), Gaps = 14/202 (6%)
Frame = -3
Query: 1010 LTSHHVAKSLAGTAVYTVSNSNNEFVLISDADAAKSXGLLCFRQEDAEAFLAQVRSRKRE 831
L++ + + LAG VY +SNSN EFVL+S + KS GLL ++EDAE L +++S
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169
Query: 830 LR-GNARVVPITLDQVYMLKVEGIAFRFLPDPIQIKNAMEL----------RPANKEGFD 684
+R ++VV + L +V+ LKV G+AFR +P+ Q+KNA++ + + F
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKFCMWIQRERKTAGIDDDDFH 229
Query: 683 GVPVFQSDLLVVKRKNKRYCPVYFSKEDIEQELSKVSRAS---KGAGLSQHIMVGSFEDV 513
GVPVFQS L+++ +N Y PV+F KED+E+ L + S A I V FED+
Sbjct: 230 GVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDI 289
Query: 512 LRKMEMSEGNSGWEDLIFIPPG 447
++ M S S W+D++FIPPG
Sbjct: 290 VKGMREST-TSNWDDIVFIPPG 310
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,009,571,921
Number of Sequences: 1393205
Number of extensions: 23925849
Number of successful extensions: 207296
Number of sequences better than 10.0: 2120
Number of HSP's better than 10.0 without gapping: 93326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157135
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 71105503098
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
