Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002383A_C01 KMC002383A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK91896.1|AC091627_9 putative amidase [Solanum demissum] 108 3e-23
gb|AAK91890.1|AC091627_3 putative amidase [Solanum demissum] 108 4e-23
gb|AAL75736.1|AC091724_9 Putative amidase [Oryza sativa] gi|2130... 107 1e-22
ref|NP_195214.1| amidase - like protein; protein id: At4g34880.1... 107 1e-22
ref|NP_655928.1| Amidase, Amidase [Bacillus anthracis A2012] 61 1e-08
>gb|AAK91896.1|AC091627_9 putative amidase [Solanum demissum]
Length = 494
Score = 108 bits (271), Expect = 3e-23
Identities = 54/85 (63%), Positives = 64/85 (74%), Gaps = 1/85 (1%)
Frame = -2
Query: 553 MTRLSLNGFEKLMKRNKLDSVVIPSHSFSDILAIGGSPGVIVPAGYEK-GVPFGICFGGL 377
+T+ GFEK+MK NK+D+++ P + LAIGG PG+ VPAGY+K G PFGI FGGL
Sbjct: 406 ITKACKYGFEKMMKENKIDALMSPGADIAGHLAIGGYPGINVPAGYDKTGTPFGISFGGL 465
Query: 376 KGSEPKLIEIAYSFELATMIRKPPP 302
KGSEP LIEIAY FE AT IRKPPP
Sbjct: 466 KGSEPTLIEIAYGFEQATHIRKPPP 490
>gb|AAK91890.1|AC091627_3 putative amidase [Solanum demissum]
Length = 507
Score = 108 bits (270), Expect = 4e-23
Identities = 54/85 (63%), Positives = 64/85 (74%), Gaps = 1/85 (1%)
Frame = -2
Query: 553 MTRLSLNGFEKLMKRNKLDSVVIPSHSFSDILAIGGSPGVIVPAGYEK-GVPFGICFGGL 377
+T+ GFEK+MK NK+D+++ P + LAIGG PG+ VPAGY+K G PFGI FGGL
Sbjct: 419 ITKACKYGFEKMMKENKIDALMSPGAYIASHLAIGGYPGINVPAGYDKTGTPFGISFGGL 478
Query: 376 KGSEPKLIEIAYSFELATMIRKPPP 302
KGSEP LIEIAY FE AT IRKPPP
Sbjct: 479 KGSEPTLIEIAYGFEQATHIRKPPP 503
>gb|AAL75736.1|AC091724_9 Putative amidase [Oryza sativa]
gi|21306609|gb|AAM46058.1|AC122145_12 Putative amidase
[Oryza sativa (japonica cultivar-group)]
Length = 547
Score = 107 bits (267), Expect = 1e-22
Identities = 52/87 (59%), Positives = 65/87 (73%), Gaps = 1/87 (1%)
Frame = -2
Query: 553 MTRLSLNGFEKLMKRNKLDSVVIPSHSFSDILAIGGSPGVIVPAGY-EKGVPFGICFGGL 377
+ L +G EK+M+ N+LD++V P S +LAIGG P + VPAGY GVPF ICFGGL
Sbjct: 457 LNELCESGLEKIMRVNQLDAIVSPGASAHSLLAIGGYPAITVPAGYASNGVPFAICFGGL 516
Query: 376 KGSEPKLIEIAYSFELATMIRKPPPLR 296
KGSEP+LIEIAYSFE AT +R+PP L+
Sbjct: 517 KGSEPRLIEIAYSFEQATKVRRPPTLQ 543
>ref|NP_195214.1| amidase - like protein; protein id: At4g34880.1 [Arabidopsis
thaliana] gi|7484803|pir||T10234 amidase homolog
T11I11.120 - Arabidopsis thaliana
gi|5123705|emb|CAB45449.1| amidase-like protein
[Arabidopsis thaliana] gi|7270439|emb|CAB80205.1|
amidase-like protein [Arabidopsis thaliana]
Length = 466
Score = 107 bits (266), Expect = 1e-22
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = -2
Query: 553 MTRLSLNGFEKLMKRNKLDSVVIPSHSFSDILAIGGSPGVIVPAGYEKG-VPFGICFGGL 377
M LS NG EKL++ NKLD++V S +LAIGG PG+ VPAGY+ G VP+GI FGGL
Sbjct: 379 MKELSRNGIEKLIEENKLDAIVTLGSDLSSVLAIGGYPGINVPAGYDSGGVPYGISFGGL 438
Query: 376 KGSEPKLIEIAYSFELATMIRKPP 305
+ SEPKLIEIA++FE AT+IRKPP
Sbjct: 439 RFSEPKLIEIAFAFEQATLIRKPP 462
>ref|NP_655928.1| Amidase, Amidase [Bacillus anthracis A2012]
Length = 491
Score = 60.8 bits (146), Expect = 1e-08
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = -2
Query: 532 GFEKLMKRNKLDSVVIPSHSFSDILAIGGSPGVIVPAGY-EKGVPFGICFGGLKGSEPKL 356
G + +++ LD+++ PS+ S I A G P + +PAGY E G PFGI SE L
Sbjct: 412 GIDFALEKYNLDAILFPSYIGSTICAKAGYPSIAIPAGYMEGGRPFGITLASTAFSEGTL 471
Query: 355 IEIAYSFELATMIRKPPPL 299
I++AY+FE AT RK P L
Sbjct: 472 IKLAYAFEQATNHRKIPGL 490
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,396,042
Number of Sequences: 1393205
Number of extensions: 8346055
Number of successful extensions: 21351
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 20647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21311
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
