Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002382A_C01 KMC002382A_c01
(352 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM92670.1|AF489383_1 maturase [Ochrosperma citriodorum] 32 2.7
ref|NP_487598.1| nitrogen assimilation regulatory protein [Nosto... 32 2.7
ref|XP_230391.1| similar to olfactory receptor MOR248-1 [Mus mus... 31 3.5
ref|NP_609297.1| CG13114-PA [Drosophila melanogaster] gi|7297530... 31 4.6
ref|XP_141466.1| similar to olfactory receptor MOR248-1 [Mus mus... 31 4.6
>gb|AAM92670.1|AF489383_1 maturase [Ochrosperma citriodorum]
Length = 503
Score = 31.6 bits (70), Expect = 2.7
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -1
Query: 340 KNPTSNVQKTSSSPFFSSRHMAYYR*SLFTQFFYENNLRQI 218
+N +S+++ TSS FF R Y + F QFF+ENN + I
Sbjct: 224 RNQSSHLRSTSSGIFFE-RIYFYVKIEHFVQFFFENNFQCI 263
>ref|NP_487598.1| nitrogen assimilation regulatory protein [Nostoc sp. PCC 7120]
gi|25533926|pir||AG2250 nitrogen assimilation regulatory
protein all3558 [imported] - Nostoc sp. (strain PCC
7120) gi|17132691|dbj|BAB75257.1| nitrogen assimilation
regulatory protein [Nostoc sp. PCC 7120]
Length = 841
Score = 31.6 bits (70), Expect = 2.7
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = -2
Query: 84 NITWAWLWPIICIRFPY 34
N+ WAW WP+I + FP+
Sbjct: 454 NLFWAWWWPLILLSFPF 470
>ref|XP_230391.1| similar to olfactory receptor MOR248-1 [Mus musculus] [Rattus
norvegicus]
Length = 305
Score = 31.2 bits (69), Expect = 3.5
Identities = 16/52 (30%), Positives = 26/52 (49%)
Frame = -2
Query: 210 FILLSLSS*WLFLL*ALHSSGGS*TCKQACLNNSFIISWMRHNITWAWLWPI 55
FILL +S ++ L LHS GS C ++ ++ I + +LWP+
Sbjct: 211 FILLLISYTYILLTVKLHSKDGSSKALSTCTSHIIVVVLFFGPIIFIYLWPV 262
>ref|NP_609297.1| CG13114-PA [Drosophila melanogaster] gi|7297530|gb|AAF52785.1|
CG13114-PA [Drosophila melanogaster]
Length = 417
Score = 30.8 bits (68), Expect = 4.6
Identities = 15/41 (36%), Positives = 19/41 (45%)
Frame = +1
Query: 67 PCPCDIVAHPANYKAIIQACLFTCLATSRRMKSLK*KQPLT 189
P P D P+ YK C C R++ S + KQPLT
Sbjct: 71 PTPTDYTTQPSEYKKCYCECKLGCKEFCRKVISSEPKQPLT 111
>ref|XP_141466.1| similar to olfactory receptor MOR248-1 [Mus musculus]
gi|25023329|ref|XP_205100.1| similar to olfactory
receptor MOR248-1 [Mus musculus]
gi|25045879|ref|XP_195369.1| similar to olfactory
receptor MOR248-1 [Mus musculus]
Length = 305
Score = 30.8 bits (68), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (49%)
Frame = -2
Query: 210 FILLSLSS*WLFLL*ALHSSGGS*TCKQACLNNSFIISWMRHNITWAWLWPI 55
FILL +S ++ L LHS GS C ++ ++ + + +LWP+
Sbjct: 211 FILLLISYTYILLTVQLHSKDGSSKALSTCTSHIIVVLLFFGPVIFIYLWPV 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,271,570
Number of Sequences: 1393205
Number of extensions: 5006110
Number of successful extensions: 10423
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10423
length of database: 448,689,247
effective HSP length: 92
effective length of database: 320,514,387
effective search space used: 7692345288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
