Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002379A_C01 KMC002379A_c01
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564138.1| expressed protein; protein id: At1g21380.1, sup... 108 5e-23
ref|NP_177823.1| unknown protein; protein id: At1g76970.1 [Arabi... 103 2e-21
pir||S22534 seed protein B32E - barley (fragment) gi|1345530|emb... 98 1e-19
gb|AAL65395.1| seed protein B32E [Oryza sativa] 44 0.002
ref|NP_175353.1| hypothetical protein; protein id: At1g49270.1 [... 44 0.003
>ref|NP_564138.1| expressed protein; protein id: At1g21380.1, supported by cDNA:
gi_14334601, supported by cDNA: gi_17104530 [Arabidopsis
thaliana] gi|25518763|pir||H86346 hypothetical protein
F24J8.3 [imported] - Arabidopsis thaliana
gi|9454570|gb|AAF87893.1|AC015447_3 Unknown protein
[Arabidopsis thaliana] gi|14334602|gb|AAK59479.1|
unknown protein [Arabidopsis thaliana]
gi|17104531|gb|AAL34154.1| unknown protein [Arabidopsis
thaliana]
Length = 506
Score = 108 bits (271), Expect = 5e-23
Identities = 62/133 (46%), Positives = 83/133 (61%), Gaps = 21/133 (15%)
Frame = -1
Query: 650 PVYDEPSPMNKSSEH-------------LPPAPWDTPSPVVIPPPPS-KHNQRQQFFEQH 513
P++DEP P +KS EH LPPAPW+T P PP S + N+R ++F+ +
Sbjct: 372 PIFDEPVPQSKSPEHALFTKPVYDQTEQLPPAPWETQEPRKYPPSMSARTNKRPEYFQHN 431
Query: 512 GGSHSSNGSSSSSDGLVGQTQNLSLNSS------TPPKQQ-KPEDALFKDLVDFAKSKTS 354
HSS+ S SS D L+GQ++NLSLN + TPPK+ KPED LFKDL+DFAK++TS
Sbjct: 432 VPQHSSSASESSYDDLLGQSRNLSLNPTASAAPVTPPKKDDKPEDILFKDLMDFAKTRTS 491
Query: 353 SSSRPNSSY*DNK 315
SSS + +NK
Sbjct: 492 SSSSSKPNNQNNK 504
>ref|NP_177823.1| unknown protein; protein id: At1g76970.1 [Arabidopsis thaliana]
gi|25406484|pir||F96798 hypothetical protein F22K20.7
[imported] - Arabidopsis thaliana
gi|2829927|gb|AAC00635.1| Unknown protein [Arabidopsis
thaliana]
Length = 387
Score = 103 bits (258), Expect = 2e-21
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Frame = -1
Query: 659 NKQPVYDEPSPM-NKSSEHLPPAPWDTPSPVVIPPPPSKHNQRQQFFEQHGGSHSSNGSS 483
+ PV+D+ SP +KSSE + +PPPPS+HNQRQQFFE H HSS+GS
Sbjct: 292 SSSPVFDDASPQQSKSSEVIRN----------LPPPPSRHNQRQQFFEHH---HSSSGSD 338
Query: 482 SSSDGLVGQTQNLSLNSSTPPKQQKPEDALFKDLVDFAKSKTSSSSRPNSS 330
SS +G QT+NLSL SS P K++KPED LFKDLV+FAK+++S ++ N S
Sbjct: 339 SSYEG---QTRNLSLTSSEPQKEEKPEDLLFKDLVEFAKTRSSKANNNNRS 386
>pir||S22534 seed protein B32E - barley (fragment) gi|1345530|emb|CAA45538.1|
B32E [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 97.8 bits (242), Expect = 1e-19
Identities = 53/109 (48%), Positives = 67/109 (60%), Gaps = 11/109 (10%)
Frame = -1
Query: 623 NKSSEHLPPAPWDTPSPVVIPPPPSKHNQRQQFFEQHGGSHSSNGSSSSSDGLVGQTQNL 444
+ +SE LP APW+ +PV +PPPP++H QRQQFFEQ G N + D ++ QT +L
Sbjct: 144 SSTSEDLPKAPWEAQAPVSLPPPPARHGQRQQFFEQQHGFPGGN-NEGGYDEMLTQTGSL 202
Query: 443 SLNS-----------STPPKQQKPEDALFKDLVDFAKSKTSSSSRPNSS 330
SLN ST +Q K EDALFKDLVDFAK SS S+P +S
Sbjct: 203 SLNQRNTENGKSASVSTASRQPKHEDALFKDLVDFAKKNPSSPSKPANS 251
>gb|AAL65395.1| seed protein B32E [Oryza sativa]
Length = 287
Score = 44.3 bits (103), Expect = 0.002
Identities = 20/44 (45%), Positives = 27/44 (60%), Gaps = 3/44 (6%)
Frame = -1
Query: 650 PVYDEPSPMNK---SSEHLPPAPWDTPSPVVIPPPPSKHNQRQQ 528
P + S NK S E LP APW+ +P +PPPP+++ QRQQ
Sbjct: 244 PGFSSSSNANKYGDSGEDLPKAPWEAQAPGSLPPPPARYGQRQQ 287
>ref|NP_175353.1| hypothetical protein; protein id: At1g49270.1 [Arabidopsis
thaliana] gi|25387089|pir||A96529 hypothetical protein
F13F21.28 [imported] - Arabidopsis thaliana
gi|5430769|gb|AAD43169.1|AC007504_24 Similar to somatic
embryogenesis receptor-like kinase [Arabidopsis
thaliana]
Length = 699
Score = 43.5 bits (101), Expect = 0.003
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = -1
Query: 635 PSPMNKS---SEHLPPAPWDTPSPVVIPPPPSKHNQRQQFFEQHGGSHSSNGSSSSSDGL 465
P P N S S PP P D+ S PPPPS +Q + +G ++N ++ +DG
Sbjct: 66 PLPENSSDGSSSSSPPPPSDSSSQSQSPPPPSTSPPQQS--DNNGNKGNNNENNKGNDGS 123
Query: 464 VGQTQNLSLNSSTPPKQQKPEDALFKDLVDFAKSKTSSSSRPNSS 330
G N +++ + PP + + + A ++S S +S+
Sbjct: 124 SGDGGNKNMSHTPPPPSKTSDHSSHSQPRSLAPPTSNSGSNSSSN 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 607,194,290
Number of Sequences: 1393205
Number of extensions: 14086218
Number of successful extensions: 77742
Number of sequences better than 10.0: 240
Number of HSP's better than 10.0 without gapping: 52956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72857
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
