Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002378A_C01 KMC002378A_c01
(790 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G96742 unknown protein F17M19.13 [imported] - Arabidopsis t... 55 9e-07
gb|AAF32326.1|AF218808_1 ReMembR-H2 protein JR702 [Arabidopsis t... 55 9e-07
ref|NP_177343.2| unknown protein; protein id: At1g71980.1, suppo... 55 9e-07
ref|NP_191075.2| putative protein; protein id: At3g55150.1, supp... 35 1.6
ref|XP_240326.1| hypothetical protein XP_240326 [Rattus norvegicus] 35 1.6
>pir||G96742 unknown protein F17M19.13 [imported] - Arabidopsis thaliana
gi|12324534|gb|AAG52220.1|AC021665_3 unknown protein;
70660-72219 [Arabidopsis thaliana]
Length = 424
Score = 55.5 bits (132), Expect = 9e-07
Identities = 33/79 (41%), Positives = 44/79 (54%), Gaps = 17/79 (21%)
Frame = -1
Query: 781 PSPSDASVSYIGSSSHQQR---------TLRY--------SESTASFIGSSSHQQHPLRY 653
PSPS + SYI + Q RY S ++ + GSS++ +PLRY
Sbjct: 346 PSPSPSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRY 405
Query: 652 SESAASFSPFASANSLPEC 596
SESA +FSP+ASANSLP+C
Sbjct: 406 SESAGTFSPYASANSLPDC 424
>gb|AAF32326.1|AF218808_1 ReMembR-H2 protein JR702 [Arabidopsis thaliana]
Length = 444
Score = 55.5 bits (132), Expect = 9e-07
Identities = 33/79 (41%), Positives = 44/79 (54%), Gaps = 17/79 (21%)
Frame = -1
Query: 781 PSPSDASVSYIGSSSHQQR---------TLRY--------SESTASFIGSSSHQQHPLRY 653
PSPS + SYI + Q RY S ++ + GSS++ +PLRY
Sbjct: 366 PSPSPSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRY 425
Query: 652 SESAASFSPFASANSLPEC 596
SESA +FSP+ASANSLP+C
Sbjct: 426 SESAGTFSPYASANSLPDC 444
>ref|NP_177343.2| unknown protein; protein id: At1g71980.1, supported by cDNA:
gi_17529199 [Arabidopsis thaliana]
gi|17529200|gb|AAL38826.1| unknown protein [Arabidopsis
thaliana] gi|22136866|gb|AAM91777.1| unknown protein
[Arabidopsis thaliana]
Length = 448
Score = 55.5 bits (132), Expect = 9e-07
Identities = 33/79 (41%), Positives = 44/79 (54%), Gaps = 17/79 (21%)
Frame = -1
Query: 781 PSPSDASVSYIGSSSHQQR---------TLRY--------SESTASFIGSSSHQQHPLRY 653
PSPS + SYI + Q RY S ++ + GSS++ +PLRY
Sbjct: 370 PSPSPSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRY 429
Query: 652 SESAASFSPFASANSLPEC 596
SESA +FSP+ASANSLP+C
Sbjct: 430 SESAGTFSPYASANSLPDC 448
>ref|NP_191075.2| putative protein; protein id: At3g55150.1, supported by cDNA:
gi_18377617, supported by cDNA: gi_20465378 [Arabidopsis
thaliana] gi|18377618|gb|AAL66959.1| unknown protein
[Arabidopsis thaliana] gi|20465379|gb|AAM20093.1|
unknown protein [Arabidopsis thaliana]
Length = 636
Score = 34.7 bits (78), Expect = 1.6
Identities = 25/77 (32%), Positives = 35/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 538 LLVQLHKHLNHMINQSKQFNILGGSLQM--QTVRSSPPIRCTGVDAVDDWKNQ*NLLLTH 711
LL +L H + S + L +LQ+ +TV S+P G DDW N+ L
Sbjct: 444 LLCKLDTKAEHYKDVSLSYLFLANNLQIIIETVGSTPLRNLLG----DDWLNKHEDKLCA 499
Query: 712 YTGVYVVGDWKNQYNSL 762
Y G Y + W N + SL
Sbjct: 500 YAGNYEIAAWSNVFMSL 516
>ref|XP_240326.1| hypothetical protein XP_240326 [Rattus norvegicus]
Length = 187
Score = 34.7 bits (78), Expect = 1.6
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = -1
Query: 385 MCLLRHLTSFLAPGFSL*HFCDF----SCIYMCWLKFLHFQVHELPYGHEC---FVCALN 227
MC LRH+ S L SL H C S I+MCWL+ + +H H C +C+L
Sbjct: 19 MCSLRHMCS-LRHMCSLRHMCSLRHKCSLIHMCWLRHMCSLIHMCSLRHMCSLRHMCSLR 77
Query: 226 N 224
+
Sbjct: 78 H 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,197,674
Number of Sequences: 1393205
Number of extensions: 13292947
Number of successful extensions: 33139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 30698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32817
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39495713322
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
