Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002377A_C01 KMC002377A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188298.2| unknown protein; protein id: At3g16760.1 [Arabi... 84 2e-18
dbj|BAB02768.1| gene_id:MGL6.23~unknown protein [Arabidopsis tha... 57 2e-07
ref|NP_680751.1| expressed protein; protein id: At4g30480.2, sup... 50 2e-05
gb|AAL59042.1|AC087182_25 putative tetratricopeptide repeat prot... 49 5e-05
gb|EAA14869.1| agCP4755 [Anopheles gambiae str. PEST] 48 8e-05
>ref|NP_188298.2| unknown protein; protein id: At3g16760.1 [Arabidopsis thaliana]
Length = 475
Score = 84.0 bits (206), Expect(2) = 2e-18
Identities = 39/45 (86%), Positives = 43/45 (94%)
Frame = -3
Query: 575 ADAIKWLSWAVILLEKAGDDAGSVEVLSCRASCYKEVGEYKKAVA 441
ADAIKWLSWAVIL+++AGD+AGS EVLS RASCYKEVGEYKKAVA
Sbjct: 370 ADAIKWLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKKAVA 414
Score = 74.7 bits (182), Expect = 8e-13
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = -1
Query: 472 KKLGSIKRQWRDCTKILENNETYLSVLVQRALLYESMEKYKLGAGDLRNVLKIDPSH 302
K++G K+ DCTK+L++++ +++LVQRALLYESMEKYKLGA DLR VLKIDP +
Sbjct: 404 KEVGEYKKAVADCTKVLDHDKKNVTILVQRALLYESMEKYKLGAEDLRMVLKIDPGN 460
Score = 30.0 bits (66), Expect(2) = 2e-18
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 348 LARET*GMC*RLIPVTRVARSTIHRLVKMA 259
L E M ++ P R+ARST+HRL KMA
Sbjct: 445 LGAEDLRMVLKIDPGNRIARSTVHRLTKMA 474
>dbj|BAB02768.1| gene_id:MGL6.23~unknown protein [Arabidopsis thaliana]
Length = 400
Score = 56.6 bits (135), Expect = 2e-07
Identities = 26/31 (83%), Positives = 29/31 (92%)
Frame = -3
Query: 533 EKAGDDAGSVEVLSCRASCYKEVGEYKKAVA 441
++AGD+AGS EVLS RASCYKEVGEYKKAVA
Sbjct: 364 QRAGDEAGSAEVLSTRASCYKEVGEYKKAVA 394
>ref|NP_680751.1| expressed protein; protein id: At4g30480.2, supported by cDNA:
12573. [Arabidopsis thaliana] gi|25407646|pir||E85356
hypothetical protein AT4g30480 [imported] - Arabidopsis
thaliana gi|7269949|emb|CAB79766.1| putative protein
[Arabidopsis thaliana]
Length = 277
Score = 50.1 bits (118), Expect = 2e-05
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = -1
Query: 469 KLGSIKRQWRDCTKILENNETYLSVLVQRALLYESMEKYKLGAGDLRNVLKIDPSH 302
KLG + ++CTK LE N TY LV+RA +E +E ++ DL+ +L++DPS+
Sbjct: 158 KLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTDLKKILELDPSN 213
>gb|AAL59042.1|AC087182_25 putative tetratricopeptide repeat protein [Oryza sativa]
Length = 548
Score = 48.9 bits (115), Expect = 5e-05
Identities = 23/66 (34%), Positives = 38/66 (56%), Gaps = 1/66 (1%)
Frame = -1
Query: 496 CHAGLHVT-KKLGSIKRQWRDCTKILENNETYLSVLVQRALLYESMEKYKLGAGDLRNVL 320
CH+ V KLG ++CTK LE N +YL L++R +E +E Y D++ ++
Sbjct: 419 CHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKLEHYDEAIADMKKII 478
Query: 319 KIDPSH 302
++DPS+
Sbjct: 479 ELDPSN 484
>gb|EAA14869.1| agCP4755 [Anopheles gambiae str. PEST]
Length = 497
Score = 48.1 bits (113), Expect = 8e-05
Identities = 24/58 (41%), Positives = 32/58 (54%)
Frame = -1
Query: 478 VTKKLGSIKRQWRDCTKILENNETYLSVLVQRALLYESMEKYKLGAGDLRNVLKIDPS 305
V KLG+++ DC+ L NE Y+ L+QRA LY +ME Y+ D LK D S
Sbjct: 302 VNSKLGNLREAIADCSSALALNEKYMKALLQRAKLYYNMENYEEAVKDYEKALKSDRS 359
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,025,863
Number of Sequences: 1393205
Number of extensions: 10283368
Number of successful extensions: 28172
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 27199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28149
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
