Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002374A_C01 KMC002374A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43692.1| unknown protein [Arabidopsis thaliana] 120 1e-26
ref|NP_563925.1| glycosyltransferase family; protein id: At1g132... 120 1e-26
gb|AAM61338.1| putative glycosyl transferase [Arabidopsis thaliana] 119 3e-26
gb|AAM63375.1| putative glycosyl transferase [Arabidopsis thaliana] 110 2e-23
ref|NP_192122.1| predicted glycosyl transferase; protein id: At4... 110 2e-23
>dbj|BAC43692.1| unknown protein [Arabidopsis thaliana]
Length = 282
Score = 120 bits (302), Expect = 1e-26
Identities = 52/62 (83%), Positives = 59/62 (94%)
Frame = -3
Query: 660 GLAGDNLEGLCRDLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHAPSLFS 481
GL GDNLEGLCR+LHPGPVSLLHWSGKGKPWLR+DS++PCPLDSLWAPYDLFR++P L S
Sbjct: 222 GLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRLDSRRPCPLDSLWAPYDLFRYSP-LIS 280
Query: 480 DT 475
D+
Sbjct: 281 DS 282
>ref|NP_563925.1| glycosyltransferase family; protein id: At1g13250.1, supported by
cDNA: 117402. [Arabidopsis thaliana]
Length = 345
Score = 120 bits (302), Expect = 1e-26
Identities = 52/62 (83%), Positives = 59/62 (94%)
Frame = -3
Query: 660 GLAGDNLEGLCRDLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHAPSLFS 481
GL GDNLEGLCR+LHPGPVSLLHWSGKGKPWLR+DS++PCPLDSLWAPYDLFR++P L S
Sbjct: 285 GLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRLDSRRPCPLDSLWAPYDLFRYSP-LIS 343
Query: 480 DT 475
D+
Sbjct: 344 DS 345
>gb|AAM61338.1| putative glycosyl transferase [Arabidopsis thaliana]
Length = 345
Score = 119 bits (299), Expect = 3e-26
Identities = 52/62 (83%), Positives = 58/62 (92%)
Frame = -3
Query: 660 GLAGDNLEGLCRDLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHAPSLFS 481
GL GDNLEGLCR+LHPGPVSLLHWSGKGKPWLR+DS++PCPLDSLWAPYDLFR +P L S
Sbjct: 285 GLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRLDSRRPCPLDSLWAPYDLFRFSP-LIS 343
Query: 480 DT 475
D+
Sbjct: 344 DS 345
>gb|AAM63375.1| putative glycosyl transferase [Arabidopsis thaliana]
Length = 346
Score = 110 bits (275), Expect = 2e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = -3
Query: 660 GLAGDNLEGLCRDLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHA 496
GL GDN+ G CRDLHPGPVSLLHWSG GKPW+R+DSK+PCPLD+LW PYDL+RH+
Sbjct: 291 GLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWIRLDSKRPCPLDALWTPYDLYRHS 345
>ref|NP_192122.1| predicted glycosyl transferase; protein id: At4g02130.1, supported
by cDNA: 21952. [Arabidopsis thaliana]
gi|7484990|pir||T01514 glycosyl transferase homolog
T10M13.14 - Arabidopsis thaliana
gi|2104536|gb|AAC78704.1| predicted glycosyl transferase
[Arabidopsis thaliana] gi|7268597|emb|CAB80706.1|
predicted glycosyl transferase [Arabidopsis thaliana]
gi|24030376|gb|AAN41350.1| putative glycosyl transferase
[Arabidopsis thaliana] gi|26453088|dbj|BAC43620.1|
putative glycosyl transferase [Arabidopsis thaliana]
Length = 346
Score = 110 bits (275), Expect = 2e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = -3
Query: 660 GLAGDNLEGLCRDLHPGPVSLLHWSGKGKPWLRIDSKKPCPLDSLWAPYDLFRHA 496
GL GDN+ G CRDLHPGPVSLLHWSG GKPW+R+DSK+PCPLD+LW PYDL+RH+
Sbjct: 291 GLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWIRLDSKRPCPLDALWTPYDLYRHS 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,138,621
Number of Sequences: 1393205
Number of extensions: 14216491
Number of successful extensions: 60908
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 49081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57720
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
