Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002371A_C01 KMC002371A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87190.1|AF480497_18 putative pelota [Oryza sativa (japonic... 110 7e-24
pir||T05870 cell division protein pelota - Arabidopsis thaliana ... 107 6e-23
ref|NP_191398.1| pelota-like protein; protein id: At3g58390.1 [A... 102 2e-21
ref|NP_598819.1| pelota homolog; expressed sequence AA409897; ex... 80 4e-16
ref|XP_215478.1| similar to pelota homolog; expressed sequence A... 80 4e-16
>gb|AAL87190.1|AF480497_18 putative pelota [Oryza sativa (japonica cultivar-group)]
Length = 446
Score = 110 bits (276), Expect = 7e-24
Identities = 58/91 (63%), Positives = 65/91 (70%)
Frame = -3
Query: 500 SARACYGMKHVEVANERLAVQTLLITDELFRNSDIAARKKFVNLVNSIKDSGGTVHVFSS 321
SARACYG KHVE+ANERLA+QTLLITD LFRNSDIA R+ +V LV S+K GGTVH+FSS
Sbjct: 357 SARACYGPKHVEIANERLAIQTLLITDNLFRNSDIATRQNYVRLVESVKKFGGTVHIFSS 416
Query: 320 MHCLWRTASTDKWHCCQFFGFRLPDLEDIEM 228
MH + F LPDLEDIEM
Sbjct: 417 MHVSGEQLA-QLTGIAAILRFPLPDLEDIEM 446
>pir||T05870 cell division protein pelota - Arabidopsis thaliana
gi|3941543|gb|AAC82379.1| pelota [Arabidopsis thaliana]
gi|4469016|emb|CAB38277.1| pelota (PEL1) [Arabidopsis
thaliana] gi|7269619|emb|CAB81415.1| pelota (PEL1)
[Arabidopsis thaliana] gi|18377690|gb|AAL66995.1|
putative pelota (PEL1) protein [Arabidopsis thaliana]
gi|20465995|gb|AAM20219.1| putative pelota protein
(PEL1) [Arabidopsis thaliana]
Length = 378
Score = 107 bits (268), Expect = 6e-23
Identities = 55/89 (61%), Positives = 64/89 (71%)
Frame = -3
Query: 494 RACYGMKHVEVANERLAVQTLLITDELFRNSDIAARKKFVNLVNSIKDSGGTVHVFSSMH 315
RACYG KHVEVANER+A+QTLLITDELFRNSD+ RKK+VNLV S+KDSGG +FS+MH
Sbjct: 291 RACYGPKHVEVANERMAIQTLLITDELFRNSDVKTRKKYVNLVESVKDSGGDAFIFSAMH 350
Query: 314 CLWRTASTDKWHCCQFFGFRLPDLEDIEM 228
+ F LP+LEDIEM
Sbjct: 351 VSGEQLA-QLTGIAALLRFPLPELEDIEM 378
>ref|NP_191398.1| pelota-like protein; protein id: At3g58390.1 [Arabidopsis thaliana]
gi|11279545|pir||T45999 pelota-like protein -
Arabidopsis thaliana gi|6735351|emb|CAB68177.1|
pelota-like protein [Arabidopsis thaliana]
Length = 395
Score = 102 bits (254), Expect = 2e-21
Identities = 53/89 (59%), Positives = 62/89 (69%)
Frame = -3
Query: 494 RACYGMKHVEVANERLAVQTLLITDELFRNSDIAARKKFVNLVNSIKDSGGTVHVFSSMH 315
RACYG KHVEVA+ER+A+QTLLI D LFRNSD+ RKK+V+ V S+KDSGG V +FSSMH
Sbjct: 308 RACYGPKHVEVAHERMAIQTLLIIDGLFRNSDVKTRKKYVDFVESVKDSGGEVFIFSSMH 367
Query: 314 CLWRTASTDKWHCCQFFGFRLPDLEDIEM 228
+ F LPDLEDIEM
Sbjct: 368 ASGEQLA-QHTGIAAILRFPLPDLEDIEM 395
>ref|NP_598819.1| pelota homolog; expressed sequence AA409897; expressed sequence
AI852218 [Mus musculus]
gi|14276152|gb|AAK58116.1|AF148638_1 PELOTA [Mus
musculus] gi|14276154|gb|AAK58117.1|AF148639_1 PELOTA
[Mus musculus]
Length = 385
Score = 80.1 bits (196), Expect(2) = 4e-16
Identities = 36/60 (60%), Positives = 49/60 (81%)
Frame = -3
Query: 494 RACYGMKHVEVANERLAVQTLLITDELFRNSDIAARKKFVNLVNSIKDSGGTVHVFSSMH 315
RA YG+K VE ANE LA+ TLLI+DELFR+ D+A R ++V LV+S+K++ GTV +FSS+H
Sbjct: 291 RAFYGLKQVERANEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLH 350
Score = 25.4 bits (54), Expect(2) = 4e-16
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -1
Query: 328 FHPCTVSGEQLAQISGIAA 272
F VSGEQL Q++G+AA
Sbjct: 346 FSSLHVSGEQLGQLTGVAA 364
>ref|XP_215478.1| similar to pelota homolog; expressed sequence AA409897; expressed
sequence AI852218 [Mus musculus] [Rattus norvegicus]
Length = 165
Score = 80.1 bits (196), Expect(2) = 4e-16
Identities = 36/60 (60%), Positives = 49/60 (81%)
Frame = -3
Query: 494 RACYGMKHVEVANERLAVQTLLITDELFRNSDIAARKKFVNLVNSIKDSGGTVHVFSSMH 315
RA YG+K VE ANE LA+ TLLI+DELFR+ D+A R ++V LV+S+K++ GTV +FSS+H
Sbjct: 71 RAFYGLKQVERANEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLH 130
Score = 25.4 bits (54), Expect(2) = 4e-16
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -1
Query: 328 FHPCTVSGEQLAQISGIAA 272
F VSGEQL Q++G+AA
Sbjct: 126 FSSLHVSGEQLGQLTGVAA 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,764,791
Number of Sequences: 1393205
Number of extensions: 9176133
Number of successful extensions: 19074
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 18587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19059
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
